1 5' 3' | 2 5' 3' | 3 5' 3' |
...catcttggcattatcatgaaagctaagccttgcaaactctagttgattattatcttttagtcctttagttacttgattgaggaccgaaggttgtctgcagGATCACTTGGCTTTAATGATGGAACTACTTGGCAAGGTGCCGAAGAAG
species | Zea mays |
transcript | GRMZM2G162086_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAAATGCTATTTACACCCAAGGAAGGCCATGGATACAGTGAAGATGAG GATCACTTGGCTTTAATGATGGAACTACTTGGCAAGGTGCCGAAGAAGEST: gi|33100005|gb|CF059965.1|CF059965
genomic: GAGAAATGCTATTTACACCCAAGGAAGGCCATGGATACAGTGAAGATGAGgtatatatcg ... ttgtctgcagGATCACTTGGCTTTAATGATGGAACTACTTGGCAAGGTGCCGAAGAAG
EST: GAGAAATGCTATTTACACCCAAGGAAGGCCATGGATACAGTGAAGATGAG GATCACTTGGCTTTAATGATGGAACTACTTGGCAAGGTGCCGAAGAAG
genomic: GAGAAATGCTATTTACACCCAAGGAAGGCCATGGATACAGTGAAGATGAGgtatatatcg ... ttgtctgcagGATCACTTGGCTTTAATGATGGAACTACTTGGCAAGGTGCCGAAGAAG
attattatcttttagtcctttagttacttgattgaggaccgaaggttgtctgcagGATCACTTGGCTTTAATGATGGAACTACTTGGCAAGGTGCCGAAGAAG
acttgat putative branch site (score: 107)
tatctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcttggcattatcatgaaagctaagccttgcaaactctagttgattattatcttttagtcctttagttacttgattgaggaccgaaggttgtctgcagGATCACTTGGCTTTAATGATGGAACTACTTGGCAAGGTGCCGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG