1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattgaccaagatcttggagtcctaaaagatcagatcaatgattactatggagattgcatgtgtttttgtaccagtctaatgttattgtactatgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAGTGG
species | Zea mays |
transcript | GRMZM2G161566_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCATGAAAACTTGCATAAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAAAAGTTCTGTTCTACTTAAACGGGAGGGGTATTTACTTAEST: gi|71320315|gb|DR796905.1|DR796905
genomic: GTCATGAAAACTTGCATAA-CTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211098206|gb|FL312089.1|FL312089
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|148935612|gb|EC879655.2|EC879655
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|74244986|gb|DT652900.1|DT652900
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211424454|gb|FL316412.1|FL316412
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211307748|gb|FL198215.1|FL198215
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|30087806|gb|CB886012.1|CB886012
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|148962769|gb|EE013680.2|EE013680
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211306681|gb|FL364492.1|FL364492
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTYTANTTACTTAEST: gi|211494300|gb|FL310097.1|FL310097
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211213913|gb|FL360058.1|FL360058
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211537841|gb|FL338654.1|FL338654
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211274785|gb|FL366576.1|FL366576
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACNAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211307749|gb|FL198216.1|FL198216
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: -TCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|101387955|gb|EB815991.1|EB815991
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|31664615|gb|CD573548.1|CD573548
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|78078108|gb|DV506523.1|DV506523
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211105937|gb|FL329403.1|FL329403
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTEST: gi|211151343|gb|FL367847.1|FL367847
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATT
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211101919|gb|FL367365.1|FL367365
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|71447774|gb|DR828824.1|DR828824
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211265503|gb|FL351831.1|FL351831
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|91048521|gb|EB158939.1|EB158939
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|78116794|gb|DV535181.1|DV535181
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|71447773|gb|DR828823.1|DR828823
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAATTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAGATCAGAAGAAGTTCTGAGCTACTTAAAEST: gi|211168848|gb|FL341411.1|FL341411
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211491457|gb|FL310570.1|FL310570
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|88757481|gb|DY541622.1|DY541622
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAEST: gi|211104289|gb|FL362968.1|FL362968
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: -TCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTT--T-AEST: gi|211477893|gb|FL342552.1|FL342552
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
EST: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAG AGAAAATCAGAAGAAKTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
genomic: GTCATGAAAACTTGCATAACTCCGTTGACGAAGCTCTCCTGTTGAAGgtattgacca ... atgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTA
atggagattgcatgtgtttttgtaccagtctaatgttattgtactatgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAGTGG
gtctaat putative branch site (score: 3)
taatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgaccaagatcttggagtcctaaaagatcagatcaatgattactatggagattgcatgtgtttttgtaccagtctaatgttattgtactatgatttcagAGAAAATCAGAAGAAGTTCTGTTCTACTTAAACGGGAGGTGTATTTACTTAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT