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...tttttttttgcaaataacccctttaaacatctcaagagcctctatattaatcaccactgtacatgccctaacatctccttgtaactgaaattgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTCGTCGTGGATCATCAAATCACATGGAGAGGCAACTCCAGTTTACAGGGA
species | Zea mays |
transcript | GRMZM2G160569_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCYGGTGCAATGATCGCAGSAGCTGTGTGTTTCCGCAAGGGCAGEST: gi|78085961|gb|DV514354.1|DV514354
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTT-CCGCAAGGGCAG
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGAGGAGGCTGGTGCAATGATCGCACCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|76020752|gb|DT947922.1|DT947922
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|211148217|gb|FL118145.1|FL118145
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGEST: gi|31358086|gb|CD442443.1|CD442443
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAG
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGCGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|91051275|gb|EB161693.1|EB161693
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|29167875|gb|CB411135.1|CB411135
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|67013089|gb|CO441838.1|CO441838
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGT-TTCCGCAAGGGCAGTEST: gi|149110301|gb|EE190341.2|EE190341
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|31910847|gb|CD651628.1|CD651628
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|76932741|gb|DV173142.1|DV173142
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|149014463|gb|EE044079.2|EE044079
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAACAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCCATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|148980469|gb|EE027156.2|EE027156
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|31356050|gb|CD440407.1|CD440407
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGCGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|93016717|gb|EB642237.1|EB642237
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|50332178|gb|CO527304.1|CO527304
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|149066716|gb|EE286857.2|EE286857
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|32837292|gb|CD976970.1|CD976970
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGACAATCTCGAG GGCGGAGGCTGGTGCATTGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|149085225|gb|EE174733.2|EE174733
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|211148219|gb|FL118147.1|FL118147
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|148953388|gb|EE152882.2|EE152882
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|149028342|gb|EE286117.2|EE286117
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|149101142|gb|EE187250.2|EE187250
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|78075695|gb|DV504129.1|DV504129
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|211149659|gb|FL118150.1|FL118150
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTEST: gi|149009227|gb|EE041332.2|EE041332
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
EST: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG GGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
genomic: TCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgtgaggaaca ... ttgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGT
attaatcaccactgtacatgccctaacatctccttgtaactgaaattgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTCGTCGTGGATCATCAAATCACATGGAGAGGCAACTCCAGTTTACAGGGA
ttgtaac putative branch site (score: 116)
aaattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttttgcaaataacccctttaaacatctcaagagcctctatattaatcaccactgtacatgccctaacatctccttgtaactgaaattgtattcagGGTGGAGGCTGGTGCAATGATCGCAGCAGCTGTGTGTTCCGCAAGGGCAGTCGTCGTGGATCATCAAATCACATGGAGAGGCAACTCCAGTTTACAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - -ttttgca
- - - - - - - - - - - - aaacatc
- - - - - - - - - - - - - - - - - - - - - - - - - -caccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgaa