Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatctcaccttgtttagtctccccaggggaatgttggtattgcaacagttttcatcatttacatcccacaattttctatggtatcgaaacttgttctgaatatctaattacatttctttgctgcaatgaattaactgttttcctttttgtatctactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAA

Basic information

species Zea mays
transcript GRMZM2G159369_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159369_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 3'ss of exon 2
gtacatctcaccttgtttagtctccccaggggaatgttggtattgcaacagttttcatcatttacatcccacaattttctatggtatcgaaacttgttctgaatatctaattacatttctttgctgc-aatgaattaactgttttcctttttgtatctactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAA
                                                        |  |  || |     || |  | | | ||   || |  |||| | |  ||||||| |  ||   |   ||   ||||||| |||     || ||||||     ||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||
-------------------------------------------------------aagaaaataaaaatggcattcctgtttagtg--gatatatgttattaggatctaataattttatgtgtttgttgatgaattgact-----ccattttgt-----ctatccagGTTGACTGTGATGAGCACAAGAGTGTGTGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA

upper sequence: GRMZM2G159369_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G25050.1 (Glycine max), 3'ss of exon 9
gtacatctcaccttgtttagtctccccaggggaatgttggtattgcaacagttttcatcatttacatcccacaattttctatggtatcgaaacttgttctgaatatctaattacatttctttgctgcaatgaattaactgttttcctttttgtatctactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAA
                                                    ||| ||  ||| |||   ||  || ||                    |||  ||  | | |  |||| || |  || | |||| || | ||   ||||  | |     |  ||||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| || || || || || ||
---------------------------------------------------gttttattgtttccattttacctttctcag------------------tgaggattcagtaa--tttcattacc-cattaaattgacagcttaatttttaatgta----atgtagGTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAA

upper sequence: GRMZM2G159369_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G01750.1 (Glycine max), 3'ss of exon 2
gtacatctcaccttgtttagtctccccaggggaatgttggtattgcaacagttttcatcatttacatcccacaattttctatggtatcgaaacttgttctgaatatctaattacatttctttgctgcaatgaattaactgttttcctttttgtatctactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAA
                                  ||   ||||       ||||| || |||| |||   ||  || ||                    |||  ||  | | |  |||| || |  || | |||| || | ||   ||||  | |     |  ||||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| || || || || || ||
----------------------------------tgcctgtat-------gtttttattatttccattttacctttctcag------------------tgaggattcagtaa--tttcattacc-cattaaattgacagcttaatttttaatgta----atgtagGTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAA

upper sequence: GRMZM2G159369_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 3
gtacatctcaccttgtttagtctccccaggggaatgttggtattgcaacagttttcatcatttacatcccacaattttctatggtatcgaaacttgttctgaatatctaattacatttctttgctgcaatgaattaactgttttcctttttgtatctactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCT-GGAGCCAAAGAA
                                                            |||  |        || | | |  | | |  | || |     ||   | | || | ||| || |   | | |||| ||     |   ||||  || ||  |  |||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| || || | ||||||| | 
------------------------------------------------------------tttgtacgtttttgttgtttct--ttttggcatttctcaatgatgattcaata-acttcattacc-tattaaattgacaaagcttactttttaatgta--atgtagGTTGACTGTGATGAGCATAAGAGTTTGTGCAGCAAGTATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA-

upper sequence: GRMZM2G159369_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G24520.1 (Glycine max), 3'ss of exon 3
gtacatctcaccttgtttagtctccccaggggaatgttggtattgcaacagttttcatcatttacatcccacaattttctatggtatcgaaacttgttctgaatatctaattacatttctttgctgcaatgaattaactgttttcctttttgtatctactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAA
                                                                                                               || ||||| || |       |||| || | ||   ||||  | |     |  ||||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| || || || || || ||
--------------------------------------------------------------------------------------------------------------gta-atttcattacc----caaattgacagcttaatttttaatgta----atgtagGTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211334950|gb|FK966339.1|FK966339
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGGTTTCTGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAG-TTTCTGG
EST: gi|211332792|gb|FK966335.1|FK966335
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|22819386|gb|BU499476.1|BU499476
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334956|gb|FK966345.1|FK966345
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211332783|gb|FK966326.1|FK966326
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|13388613|gb|BG462252.1|BG462252
EST:     CTTCAAGAAGGTCTAAATCTGTACTGATAGCATTAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGG
genomic: CTTCAAGAAGG-CTAAATCTGTACTGATAGCA-AAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGG
EST: gi|148935523|gb|EC879564.2|EC879564
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|13178109|gb|BG349367.1|BG349367
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|24763723|gb|CA398894.1|CA398894
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334952|gb|FK966341.1|FK966341
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGYGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334947|gb|FK966336.1|FK966336
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCA
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCA
EST: gi|21891538|gb|BQ744751.1|BQ744751
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211332787|gb|FK966330.1|FK966330
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334959|gb|FK966348.1|FK966348
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|32858375|gb|CD998056.1|CD998056
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|9254368|gb|BE344836.1|BE344836
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|88755206|gb|DY539347.1|DY539347
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211332782|gb|FK966325.1|FK966325
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|111145784|gb|EE258169.1|EE258169
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334948|gb|FK966337.1|FK966337
EST:     AAAAACTTGGCGCCA-CTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|33285626|gb|CF075421.1|CF075421
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334955|gb|FK966344.1|FK966344
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|31360143|gb|CD444500.1|CD444500
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|20507142|gb|BQ279504.1|BQ279504
EST:     AATTACTTGGCGCCTGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|26457090|gb|CA828673.1|CA828673
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211332789|gb|FK966332.1|FK966332
EST:     AAAAACTTGGCGCCA-STTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|6994161|gb|AW453375.1|AW453375
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211332788|gb|FK966331.1|FK966331
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211332781|gb|FK966324.1|FK966324
EST:     AAAAACTTGGCGCCASSTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|32864543|gb|CF004225.1|CF004225
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211332785|gb|FK966328.1|FK966328
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334949|gb|FK966338.1|FK966338
EST:     AAAAACTTGGCGCCA-CTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211332784|gb|FK966327.1|FK966327
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|22935460|gb|BU571735.1|BU571735
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334953|gb|FK966342.1|FK966342
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334954|gb|FK966343.1|FK966343
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211332790|gb|FK966333.1|FK966333
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCYAAATCTGTACTGATAGCMAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211334957|gb|FK966346.1|FK966346
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG
EST: gi|211001445|gb|FL439450.1|FL439450
EST:     AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAG                         GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCT-GG
genomic: AAAAACTTGGCGCCAGCTTCAAGAAGGCTAAATCTGTACTGATAGCAAAGgtacatctca ... tactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatttctttgctgcaatgaattaactgttttcctttttgtatctactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAA
                    aattaac  putative branch site (score: 2)
                             ttttcctttttgtatc  putative PPT
                aatgaattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtacatctcaccttgtttagtctccccaggggaatgttggtattgcaacagttttcatcatttacatcccacaattttctatggtatcgaaacttgttctgaatatctaattacatttctttgctgcaatgaattaactgttttcctttttgtatctactacctagGTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAA

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