1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...accaaaactactacttctggagcatgtttacgagttggttaaaccagtaccatttttctgcgtgtctcagttgtctcaacatcattatcatgctcttcagGGTTCGTCGCCGCTTTTCTCATTTCGGGGAAAGCATGAAGAATCGTCTGCTGGACTGAGAGCATTGGCTCTTCTTGGAGTTGGTGCCTCTGGTCTTTTGA
species | Zea mays |
transcript | GRMZM2G158479_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGGGGCATTAACCAGCTCCTGAAGAGAACTCTCTACAACCAGTCTGCT GGTTCCTCGCCGCTTTTCTCATTTCGGGGAAAGCATGAAGAATCCTCTGCTEST: gi|211454193|gb|FL047438.1|FL047438
genomic: CAAGGGGCATTAACCAGCTCCTGAAGAGAACTCTCTACAACCAGTCTGTTgtaagtattt ... tgctcttcagGGTTCGTCGCCGCTTTTCTCATTTCGGGGAAAGCATGAAGAATCGTCTGCT
EST: CAA-GGGCATTAACCAGCTCCTGAAGAGAACTCTCTACAACCAGTCTGTT GGTTCGTCGCCGCTTTTCTCATTTCGGGGAAAGCATGAAGAATCGTCTGCTEST: gi|31354314|gb|CD438671.1|CD438671
genomic: CAAGGGGCATTAACCAGCTCCTGAAGAGAACTCTCTACAACCAGTCTGTTgtaagtattt ... tgctcttcagGGTTCGTCGCCGCTTTTCTCATTTCGGGGAAAGCATGAAGAATCGTCTGCT
EST: AGAGAACTCTCTACAACCAGTCTGCT GGTTCGTCTTCGCTTTTCTCATTTCGGGGAAAGCATGAAGAATCCTCTGCT
genomic: AGAGAACTCTCTACAACCAGTCTGTTgtaagtattt ... tgctcttcagGGTTCGTCGCCGCTTTTCTCATTTCGGGGAAAGCATGAAGAATCGTCTGCT
agtaccatttttctgcgtgtctcagttgtctcaacatcattatcatgctcttcagGGTTCGTCGCCGCTTTTCTCATTTCGGGGAAAGCATGAAGAATCGTCTGCTGGACTGAGAGCATTGGCTCTTCTTGGAGTTGGTGCCTCTGGTCTTTTGA
tgctcttc CT-rich tract
atttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaaaactactacttctggagcatgtttacgagttggttaaaccagtaccatttttctgcgtgtctcagttgtctcaacatcattatcatgctcttcagGGTTCGTCGCCGCTTTTCTCATTTCGGGGAAAGCATGAAGAATCGTCTGCTGGACTGAGAGCATTGGCTCTTCTTGGAGTTGGTGCCTCTGGTCTTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG