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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattgcaataaacagtacattgttggatgtttcaatggaaatctttggtcacctattgcttgcattattttttcatgtttcactactcttaaccatcattacattgttggcttaattcttgttgatctgactcctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTATTCTTATTATACTTCTCTTTTTCCAGCATGTTCTTTTATTGATTTTGAT

Basic information

species Zea mays
transcript GRMZM2G158237_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71427479|gb|DR808529.1|DR808529
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
EST: gi|76010741|gb|DT937911.1|DT937911
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
EST: gi|71448593|gb|DR829643.1|DR829643
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
EST: gi|71771559|gb|DR969496.1|DR969496
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
EST: gi|71434185|gb|DR815235.1|DR815235
EST:     AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAG                         GTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA
genomic: AGTTACTCACAGGGTCTACCTAGATGTAGAAATTGATGGCCAACACATAGgtatattgca ... ctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaccatcattacattgttggcttaattcttgttgatctgactcctaattgcagGTAGAATTGTTATTGGTCTCTATGGGGAGGTCGTTCCAAAAACAGTTGGTATTCTTATTATACTTCTCTTTTTCCAGCATGTTCTTTTATTGATTTTGAT
                                           tcctaat  putative branch site (score: 2)
                                          ctcct  CT-rich tract
                       ttaattctt  TA-rich tract