1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agctctgcacatatttactaatttagaattgatgccaactgtattgttttttttgcgtgtatgctatacaactgatgttggtatgttattgctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCATTGACGAGGTCGACAGTTTCTTGGGGCAGCGACGGACAACTGACCATGA
species | Zea mays |
transcript | GRMZM2G158136_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|149076529|gb|EE165156.2|EE165156
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTTATCTTCEST: gi|148961917|gb|EE012707.2|EE012707
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATT-ATCTTC
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|78081860|gb|DV510272.1|DV510272
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|149105403|gb|EE290912.2|EE290912
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCCAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCTEST: gi|211461323|gb|FL283286.1|FL283286
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTTGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|148949884|gb|EC895380.2|EC895380
genomic: CTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|50334041|gb|CO529167.1|CO529167
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|74244276|gb|DT652190.1|DT652190
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|78121665|gb|DV540049.1|DV540049
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|93283899|gb|EB676163.1|EB676163
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|148954924|gb|EC900412.2|EC900412
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|149077190|gb|EE165854.2|EE165854
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|76923334|gb|DV169435.1|DV169435
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|78075677|gb|DV504111.1|DV504111
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|78115003|gb|DV533391.1|DV533391
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|71435533|gb|DR816583.1|DR816583
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|149089069|gb|EE178236.2|EE178236
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|101390734|gb|EB817301.1|EB817301
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCCCAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCCGCCTGCTATTATCTTCAEST: gi|31354032|gb|CD438389.1|CD438389
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|149097605|gb|EE183498.2|EE183498
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|71299646|gb|DR785831.1|DR785831
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|71435645|gb|DR816695.1|DR816695
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGCCTTTAGTCTCGCTCACAAGCTCCAGEST: gi|148941166|gb|EC886045.2|EC886045
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAG
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|148961232|gb|EE011948.2|EE011948
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|93012345|gb|EB637865.1|EB637865
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|148940585|gb|EC885389.2|EC885389
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|148960540|gb|EE011147.2|EE011147
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|89762253|gb|DY689934.1|DY689934
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|149017489|gb|EE045689.2|EE045689
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCAEST: gi|148944282|gb|EC889378.2|EC889378
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
EST: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTG TGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
genomic: CAGGATCTCCAATCTCATGAGCAAGTGGTTCGGGGACGCACAGAAGCTTGgtgagcaatt ... gctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCA
gttttttttgcgtgtatgctatacaactgatgttggtatgttattgctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCATTGACGAGGTCGACAGTTTCTTGGGGCAGCGACGGACAACTGACCATGA
aactgat putative branch site (score: 11)
tatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctctgcacatatttactaatttagaattgatgccaactgtattgttttttttgcgtgtatgctatacaactgatgttggtatgttattgctgtggcagTGGCTGCTGTCTTTAGTCTCGCTCACAAGCTCCAGCCTGCTATTATCTTCATTGACGAGGTCGACAGTTTCTTGGGGCAGCGACGGACAACTGACCATGA
- -tctgcac
- - - - - - - - - - - - - - -tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt