1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgggtgggttctgttgccgcgggaaacaaaagcccaaaacaaaactcggcccaacacgctgtatatcctggtccccgctactgacggcggcggcgacgatggcgcgtgcagGACGTGGACGTCGCCGGTGGAGCTGATCAGGTGCCTGGAGGCCATCAAGGAGCACGCCTTCGCGACTTCGCCCTACCCCGTCATCCTCACCCTGGAAGAT
species | Zea mays |
transcript | GRMZM2G157760_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACCTCTGGCCCAACGCCGCCAAGGACGACGTTGAGGTTCTCCACGGCAG GACGTGGACGTCGCCGGTGGAGCTGATCAGGTGCCTGGAGGCCATCAAGGAEST: gi|149026597|gb|EE046022.2|EE046022
genomic: GACCTCTGGCCCAACGCCGCCAAGGACGACGTTGAGGTTCTCCACGGCAGgtgggtgggt ... gcgcgtgcagGACGTGGACGTCGCCGGTGGAGCTGATCAGGTGCCTGGAGGCCATCAAGGA
EST: GACCTCTGGCCCAACGCCGCCAAGGACGACGTTGAGGTTCTCCACGGCAG GACGTGGACGTCGCCGGTGGAGCTGATCAGGTGCCTGGAGGCCATCAAGGAEST: gi|148945039|gb|EC890223.2|EC890223
genomic: GACCTCTGGCCCAACGCCGCCAAGGACGACGTTGAGGTTCTCCACGGCAGgtgggtgggt ... gcgcgtgcagGACGTGGACGTCGCCGGTGGAGCTGATCAGGTGCCTGGAGGCCATCAAGGA
EST: GACCTCTGGCCCAACGCCGCCAAGGACGACGTTGAGGTTCTCCACGGCAG GACGTGGACGTCGCCGGTGGAGCTGATCAGGTGCCTGGAGGCCATCAAGGA
genomic: GACCTCTGGCCCAACGCCGCCAAGGACGACGTTGAGGTTCTCCACGGCAGgtgggtgggt ... gcgcgtgcagGACGTGGACGTCGCCGGTGGAGCTGATCAGGTGCCTGGAGGCCATCAAGGA
cgctgtatatcctggtccccgctactgacggcggcggcgacgatggcgcgtgcagGACGTGGACGTCGCCGGTGGAGCTGATCAGGTGCCTGGAGGCCATCAAGGAGCACGCCTTCGCGACTTCGCCCTACCCCGTCATCCTCACCCTGGAAGAT
tactgac putative branch site (score: 15)
tatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtgggttctgttgccgcgggaaacaaaagcccaaaacaaaactcggcccaacacgctgtatatcctggtccccgctactgacggcggcggcgacgatggcgcgtgcagGACGTGGACGTCGCCGGTGGAGCTGATCAGGTGCCTGGAGGCCATCAAGGAGCACGCCTTCGCGACTTCGCCCTACCCCGTCATCCTCACCCTGGAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA