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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgtctaatcactgactgctatcttgaaccttctatttttataagaagttcaatcattctaagattaagcctgatcaattatttctattattatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCTTTTCAGTCAACACCAGAGTTAATGTTTGGACTGTACCTTCTGTATTACT

Basic information

species Zea mays
transcript GRMZM2G157316_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148962075|gb|EE012879.2|EE012879
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|76281436|gb|DV021004.1|DV021004
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|211523741|gb|FL258543.1|FL258543
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCC
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|71305646|gb|DR788962.1|DR788962
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|71448463|gb|DR829513.1|DR829513
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|93014294|gb|EB639814.1|EB639814
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|149102614|gb|EE188245.2|EE188245
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|71305918|gb|DR789090.1|DR789090
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|93013209|gb|EB638729.1|EB638729
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|148999432|gb|EE036384.2|EE036384
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|211523736|gb|FL258538.1|FL258538
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|74237515|gb|DT645429.1|DT645429
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|50336165|gb|CO531291.1|CO531291
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|93013635|gb|EB639155.1|EB639155
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|211523737|gb|FL258539.1|FL258539
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGAWATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|149080963|gb|EE170059.2|EE170059
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|149105307|gb|EE290799.2|EE290799
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|86470247|gb|DY236617.1|DY236617
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGTATCTCATACCAA                         GACACTATAACAAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|71327756|gb|DR800512.1|DR800512
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|89762002|gb|DY689797.1|DY689797
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
EST: gi|211523740|gb|FL258542.1|FL258542
EST:     TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAG                         GACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT
genomic: TCGTCTTCAGCGCGCAGCGGCGCGCCCGCGCCCTCGGCATCTCATACCAGgtgggccgaa ... attatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagttcaatcattctaagattaagcctgatcaattatttctattattatttcagGACACTATAACGAATTTTCGTTTATGGAAGATATTCCCATCTGTATTTGCTTTTCAGTCAACACCAGAGTTAATGTTTGGACTGTACCTTCTGTATTACT
                        gcctgat  putative branch site (score: 4)
                                              ttatttc  putative PPT
                           tgatcaattatttcta  TA-rich tract