1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatatcagcgcaattttttggcatcgtgattattccttcattttagattctgatttttgttcttattcacgtacataaagGCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAG
species | Zea mays |
transcript | GRMZM2G156800_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACTCTTGGGTAGTGGCACCTTTGGATGCGTGTATGAGGCCACCAATAG GCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGAEST: gi|211321746|gb|FL182475.1|FL182475
genomic: AAACTCTTGGGTAGTGGCACCTTTGGATGCGTGTATGAGGCCACCAATAGgtatatcagc ... gtacataaagGCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGA
EST: ACCTCT-GGGTAGTGGCACCTTTTGGATGCGTGTATGAGGCCACCCATAN GCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATA-TTCCAGATGA
genomic: AC-TCTTGGGTAGTGGCACCTTT-GGATGCGTGTATGAGGCCACCAATAGgtatatcagc ... gtacataaagGCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGA
gtgattattccttcattttagattctgatttttgttcttattcacgtacataaagGCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAG
ttctgat putative branch site (score: 3)
atttttgttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatcagcgcaattttttggcatcgtgattattccttcattttagattctgatttttgttcttattcacgtacataaagGCACACTGGAGCTCTTTGTGCCATGAAAGAGGTGAATATAATTCCAGATGATGCTAAATCAGTCGAGTCTCTGAAGCAATTGGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA