Sequence
atgc intronic sequence ATGC exonic sequencegtatgtatctatcaaagttatatgttagtttctgcttctgtaaataactattcccgccatcactaaatcctaggtctgttcttgcagTGGAAATGCTGTGATATTCATGTCAAGGAATTTGATGAGTTTATGGAGATACCTCCATGCACAAAAGGTTGGCATAATGCTGATGCGGTGTGAATTCACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G156105_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g33180.1 (Oryza sativa), 3'ss of exon 5
gtatgtatcta--tcaaagttatatgttagtttctgcttctgtaaataactattcccgccatcactaaatcctaggtct--------gttcttgcagTGGAAATGCTGTGATATTCATGTCAAGGAATTTGATGAGTTTATGGAGATACCTCCATGCACAAAAGGTTGGCATAATGCTGATGCGGTGTGAATTCACG
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gtatgtttttggttcaaacttat-tgttg--ttttgctctattccttgattttt---gccatcactgactctgacatctttttaaaaatttttgcagTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCA
upper sequence: GRMZM2G156105_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G38720.1 (Glycine max), 3'ss of exon 4
---------------------------------gtatgtatctatcaaagttatatgttagtttctgcttctgtaaataactattcccgccatcactaaatcctaggtctgt-------tcttgcagTGGAAATGCTGTGATATTCATGTCAAGGAATTTGATGAGTTTATGGAGATACCTCCATGCACAAAAGGTTGGCATAATGCTGATGCGGTGTGA-ATTCACG
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gtcagtattgagtattcattcctttgaatgttctcgtttctttaataaaataatgcttgtggttgtgacttgtgatatgatttcagagaattacattttatttttcctttatcacattattttgcagTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTCCTCCGTGCGCAAAGGGATGGCATAATGCGGATCCAGAGTCCTGATCAC-
upper sequence: GRMZM2G156105_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S505_16V6.1 (Physcomitrella patens), 3'ss of exon 5
gtatg-tatc-tatcaaagttatatgttagtttctgcttctgtaaataactattcccgccatc-------------actaaatcctaggtctgttctt-----gcagTGGAAATGCTGTGATATTCATGTCAAGGAATTTGATGAGTTTATGGAGATACCTCCATGCACAAAAGGTTGGCATAATGCTGATGCGGTGTGAATTCACG-
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gtatgatattgcatctaatttgtaagttgccttcaa-ttgtgttcatattcttcttcacaatctgagtcttgagatgacaattcatatttcttttgtttttgtgcagTGGAAATGTTGTGATGTGCATGTAAAAGAATTTGATGAGTTCCTGGAAATACCCCCATGCGCCAAGGGTTGGCATGACGCCAAT-CCACAGGATGCGGCGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcttctgtaaataactattcccgccatcactaaatcctaggtctgttcttgcagTGGAAATGCTGTGATATTCATGTCAAGGAATTTGATGAGTTTATGGAGATACCTCCATGCACAAAAGGTTGGCATAATGCTGATGCGGTGTGAATTCACG
cactaaa putative branch site (score: 2)
tctgttctt putative PPT
tgtaaataactatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtatctatcaaagttatatgttagtttctgcttctgtaaataactattcccgccatcactaaatcctaggtctgttcttgcagTGGAAATGCTGTGATATTCATGTCAAGGAATTTGATGAGTTTATGGAGATACCTCCATGCACAAAAGGTTGGCATAATGCTGATGCGGTGTGAATTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT