1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgtaaatgctgaccacaaattgtctctcgttcttgtcctgaggtgtttcatcaaacctttttttagtgttttgacaaacgttggtttgtatttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCCAAAATTTGGGCATTGAATCGACTGACCAGGAGATAAAAGATCTGTTTCA
species | Zea mays |
transcript | GRMZM2G155822_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTG ATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCCEST: gi|211385048|gb|FL404094.1|FL404094
genomic: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTGgtgagcttta ... atttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCC
EST: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTG ATGAAGAT-CCAATGGTGAAATAGATCAGCTAGAACTTAAGCAEST: gi|211522088|gb|FL426846.1|FL426846
genomic: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTGgtgagcttta ... atttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCA
EST: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTG ATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCCEST: gi|211076464|gb|FL387314.1|FL387314
genomic: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTGgtgagcttta ... atttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCC
EST: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTG ATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCCEST: gi|149101033|gb|EE187131.2|EE187131
genomic: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTGgtgagcttta ... atttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCC
EST: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTG ATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCCEST: gi|211431345|gb|FL388369.1|FL388369
genomic: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTGgtgagcttta ... atttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCC
EST: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTG ATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCCEST: gi|211198837|gb|FL369954.1|FL369954
genomic: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTGgtgagcttta ... atttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCC
EST: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTG ATGAAGATTCCAATGGTGAAATAGATCAGCTAGAACTTAAGCATTGTTTCC
genomic: TAAGATCGACGAGAGTTTGAGAAAATGCAGGACTATCTTTCAGCAATTTGgtgagcttta ... atttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCC
gtttcatcaaacctttttttagtgttttgacaaacgttggtttgtatttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCCAAAATTTGGGCATTGAATCGACTGACCAGGAGATAAAAGATCTGTTTCA
ttttgac putative branch site (score: 183)
tttatcc putative PPT
tttttttagtgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtaaatgctgaccacaaattgtctctcgttcttgtcctgaggtgtttcatcaaacctttttttagtgttttgacaaacgttggtttgtatttatccagATGAAGATTCCAATGGTGAAATAGATCAGCTGGAACTTAAGCATTGTTTCCAAAATTTGGGCATTGAATCGACTGACCAGGAGATAAAAGATCTGTTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - -tgctgac
- - - - - - - - - - - - - - - - - tgtcctg
- - - - - - - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg