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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctccctctggcctccttttctgtttgatcacatatgcacttgttcccccatggttcttggtttccttcagatctggtgcttgtgtcatcggtttcctcaattgtctggcatctgcattgactcatgatgggtgatgctatgctgtgttctgtggtgtttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGAGGACACCAGCATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATC

Basic information

species Zea mays
transcript GRMZM2G154890_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154890_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g22140.1 (Oryza sativa), 3'ss of exon 2
gtaggctccctctggcctccttttctgtttgatcacatatgcacttgt-tcccccatggttcttggtttccttcagatctggtgcttgtgtcatcggtttcctcaattgtctggcatctgcattgactcatgatgggtgatgctatgctgtgt-tctgtggtgtttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGAGGACACCAGCATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATC
|||||  ||| |   || ||      ||||     | | |||  || | |   | ||  ||||   |    |   ||||||| ||||| |   |  ||| |            | |  |   |||| |  |  ||  ||||||| |   | |  ||| |||  |    | ||| || ||||| |||||||||||||| || ||||| |||||||||||||||||||| ||| || |||| ||||| ||||| || ||||||||||||||||||
gtaggtgcccccct-ccacccccagagttt-----cttttgcgattctgtgggcaatccttctctctccattctggatctggcgcttgagcggttcgttcctct---------gtagatttcttgattttttgtgcctgatgctgtctggggaatctatgggttcacccgcagGGGGCTGGATAACTCGGGGAAGACGACGATCGTGCTCAAGATCAATGGGGAGGATACCGGCGTCATCAGCCCCACCCTCGGCTTCAACATCAAGACCATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91874746|gb|EB404703.1|EB404703
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|60337602|gb|DN204575.1|DN204575
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCAGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|78112616|gb|DV531010.1|DV531010
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|71318964|gb|DR796231.1|DR796231
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|5932640|gb|AW057001.1|AW057001
EST:     ATCCTCATGGT                         TGGCCTGGACAACTCAGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|78082479|gb|DV510891.1|DV510891
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|211102305|gb|FL158952.1|FL158952
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCAGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|89248462|gb|DY620248.1|DY620248
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|91875540|gb|EB405497.1|EB405497
EST:     TTATCCGCAAGATCAAGCGCAAGGAGAAGGAAATGCGCATCCTCATTGGT                         TGGCCTGTACAACTCGGGGAAAACAACCATCGTTTCTCAAGATCAATGGG
genomic: TTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCAT-GGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTT-CTCAAGATCAATGGG
EST: gi|50335743|gb|CO530869.1|CO530869
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATG-T                         -GGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|76016499|gb|DT943669.1|DT943669
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|211104769|gb|FL158955.1|FL158955
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCAGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|50339681|gb|CO534807.1|CO534807
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|34391377|gb|CF384605.1|CF384605
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|78114767|gb|DV533155.1|DV533155
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|74239326|gb|DT647240.1|DT647240
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|89755818|gb|DY686096.1|DY686096
EST:     TTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACCAACCATCGTTCTCAAGATCAATGGGG
genomic: TTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGC-ATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGAC-AACCATCGTTCTCAAGATCAATGGGG
EST: gi|86469538|gb|DY235908.1|DY235908
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
EST: gi|76286526|gb|DV026094.1|DV026094
EST:     ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGT                         TGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA
genomic: ATTATCCGCAAGATCAAGCGCAAGGAGAAGGAGATGCGCATCCTCATGGTgtaggctccc ... tttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcattgactcatgatgggtgatgctatgctgtgttctgtggtgtttgtctcagTGGCCTGGACAACTCGGGGAAGACAACCATCGTTCTCAAGATCAATGGGGAGGACACCAGCATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATC
   cattgac  putative branch site (score: 3)
                                             tttgtctc  putative PPT