1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggagaggtgcaactgcaaaaccagttttacaaatcgctgctgtctgctttgtgtgtgagatttgatacttcatgctcacatattgttgacttccctgcagATATGGCAAGCATTTGTGGGTGTTGGTGCTCGAAGGATTCCTGGGTACTACAACAAATTGCTTGATGACAGGACTGAGACATTGGATGAAAAGGATCTTG
species | Zea mays |
transcript | GRMZM2G154883_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCGGCCACAGCATCTGCAGCGTTTCCGCGAGTACGCCAAGATTTACAAG ATATGGCAAGCATTTGTGGGTGTTGGTGCTCGAAGGATTCCTGGGTACTAC
genomic: TGCGGCCACAGCATCTGCAGCGTTTCCGCGAGTACGCCAAGATTTACAAGgtagtaattt ... ttccctgcagATATGGCAAGCATTTGTGGGTGTTGGTGCTCGAAGGATTCCTGGGTACTAC
gctttgtgtgtgagatttgatacttcatgctcacatattgttgacttccctgcagATATGGCAAGCATTTGTGGGTGTTGGTGCTCGAAGGATTCCTGGGTACTACAACAAATTGCTTGATGACAGGACTGAGACATTGGATGAAAAGGATCTTG
cttccctgc CT-rich tract
atttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagaggtgcaactgcaaaaccagttttacaaatcgctgctgtctgctttgtgtgtgagatttgatacttcatgctcacatattgttgacttccctgcagATATGGCAAGCATTTGTGGGTGTTGGTGCTCGAAGGATTCCTGGGTACTACAACAAATTGCTTGATGACAGGACTGAGACATTGGATGAAAAGGATCTTG
- - - - gcaactg
- - - - - - - -caaaacca
- - - - - - - - - - - - - - - - - -gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttga