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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatggcactagtttttttgtcagatagcggtggttttagaagtggcacattgtttatgctgcccatttttggtttctggctactaatttcgcagGAAGATACACTCCGCCGGTGATATCTCGAAAGACGATATCTGCCAGCTTTACATGGTGTGGAAACCGCCTTGCCATGGCTGCCATGGCAATACTAAGGAT

Basic information

species Zea mays
transcript GRMZM2G154621_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211462884|gb|FL115631.1|FL115631
EST:     AAGAGGCCACGATCTGATGAATCCATTAATCCGTCTGCGGCTGTTTTCAA                         GAAGATACACTCCGCCGGTGATATCTCGAAAGACGATATCTGCCAGCTTTA
genomic: AAGAGGCCACGATCTGATGAATCCATTAATCCGTCTGCGGCTGTTTTCAAgtatgcatgg ... aatttcgcagGAAGATACACTCCGCCGGTGATATCTCGAAAGACGATATCTGCCAGCTTTA
EST: gi|211462882|gb|FL115629.1|FL115629
EST:     AAGAGGCCACGATCTGATGAATCCATTAATCCGTCTGCGGCTGTTTTCAA                         GAAGATATACTCCGCCGGTGATATCTCGAAAGACGATATCTGCCAGCTTTA
genomic: AAGAGGCCACGATCTGATGAATCCATTAATCCGTCTGCGGCTGTTTTCAAgtatgcatgg ... aatttcgcagGAAGATACACTCCGCCGGTGATATCTCGAAAGACGATATCTGCCAGCTTTA
EST: gi|211462883|gb|FL115630.1|FL115630
EST:     AAGAGGCCACGATCTGATGAATCCATTAATCCGTCTGCGGCTGTTTTCAA                         GAAGATACACTCCGCCGGTGATATCTCGAAAGACGATATCTGCCAGCTTTA
genomic: AAGAGGCCACGATCTGATGAATCCATTAATCCGTCTGCGGCTGTTTTCAAgtatgcatgg ... aatttcgcagGAAGATACACTCCGCCGGTGATATCTCGAAAGACGATATCTGCCAGCTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtggcacattgtttatgctgcccatttttggtttctggctactaatttcgcagGAAGATACACTCCGCCGGTGATATCTCGAAAGACGATATCTGCCAGCTTTACATGGTGTGGAAACCGCCTTGCCATGGCTGCCATGGCAATACTAAGGAT
                                         tactaat  putative branch site (score: 1)
         attgtttat  TA-rich tract