1 5' 3' | 2 5' 3' | 3 5' 3' |
...tacaacaatttagttcatttagtgctgcaatgacctttagtatttttattgttattatcattattttcatttaacatgttggttccaatcaaattgcaagGGTTTGTCATACCCATCAGGGTTATCAAACAACTCTAATAGTGGTGGTCAGTCTGATGATTACGAGGCTTCTGTGGGTCCTGAAGTTAAGATACCATCAG
species | Zea mays |
transcript | GRMZM2G154574_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCAAATAAAAGGCGAATGAATGGATTTTTGGATCTCTTGCAAACTAAG GGTTTGTCATACCCATCAGGGTTATCAAACAACTCTAATAGTGGTGGTCAG
genomic: AGGCAAATAAAAGGCGAATGAATGGATTTTTGGATCTCTTGCAAACTAAGgtattgagct ... aaattgcaagGGTTTGTCATACCCATCAGGGTTATCAAACAACTCTAATAGTGGTGGTCAG
ttattgttattatcattattttcatttaacatgttggttccaatcaaattgcaagGGTTTGTCATACCCATCAGGGTTATCAAACAACTCTAATAGTGGTGGTCAGTCTGATGATTACGAGGCTTCTGTGGGTCCTGAAGTTAAGATACCATCAG
atttaac putative branch site (score: 34)
ttattatcattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaacaatttagttcatttagtgctgcaatgacctttagtatttttattgttattatcattattttcatttaacatgttggttccaatcaaattgcaagGGTTTGTCATACCCATCAGGGTTATCAAACAACTCTAATAGTGGTGGTCAGTCTGATGATTACGAGGCTTCTGTGGGTCCTGAAGTTAAGATACCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- caacaat
- - - - - - -ttcattt
- - - - - - - - - - -gtgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt