1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttttatttctggctgatgttgctttcgatactaccaattgcccacttttttgtcttcgtcaggcagttgaattatgttacttaaagacttgttctacagGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAGTGCAAAGTCAGCAACCAAACCCGATGACCACTGATGCTCCTGCAGGAA
species | Zea mays |
transcript | GRMZM2G154221_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAG GATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAEST: gi|33467119|gb|CF244168.1|CF244168
genomic: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAGgtgagtttgc ... tgttctacagGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAA
EST: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAG GATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAEST: gi|50327503|gb|CO522629.1|CO522629
genomic: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAGgtgagtttgc ... tgttctacagGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAA
EST: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAG GATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAEST: gi|78118653|gb|DV537037.1|DV537037
genomic: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAGgtgagtttgc ... tgttctacagGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAA
EST: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAG GATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAEST: gi|78084282|gb|DV512675.1|DV512675
genomic: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAGgtgagtttgc ... tgttctacagGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAA
EST: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAG GATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAA
genomic: CTCCTACAGCTAGTTCTTTTTATGATTAAGCTCCAATGAAGGATTCTCAGgtgagtttgc ... tgttctacagGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAA
cttttttgtcttcgtcaggcagttgaattatgttacttaaagacttgttctacagGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAGTGCAAAGTCAGCAACCAAACCCGATGACCACTGATGCTCCTGCAGGAA
cttgttct CT-rich tract
aattatgttacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttatttctggctgatgttgctttcgatactaccaattgcccacttttttgtcttcgtcaggcagttgaattatgttacttaaagacttgttctacagGATATTCAGAGCACAACAGAGTTGCAGTCATCAGCACAGGGTACTAATGAAGTGCAAAGTCAGCAACCAAACCCGATGACCACTGATGCTCCTGCAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - gctgatg
- - - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact