1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatgagaacaggctgtggttttcttgttattacattttgaaaggaggtatccttttgttctgtgtggcattgatttttctcttgcttgtcttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGGTTCACTATCGT
species | Zea mays |
transcript | GRMZM2G153991_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211117648|gb|FL049547.1|FL049547
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|30031799|gb|CB833650.1|CB833650
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTC-GCCAAGAAGTCCGGCGACGTCCCCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|91054743|gb|EB165161.1|EB165161
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|24773940|gb|CA409194.1|CA409194
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|149005134|gb|EE039667.2|EE039667
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|22819346|gb|BU499436.1|BU499436
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|148931677|gb|EC874859.2|EC874859
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211116860|gb|FL049534.1|FL049534
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCRRGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211150009|gb|FL374643.1|FL374643
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAS-ACACAAAGGAGACAAAATTAAGEST: gi|30031800|gb|CB833651.1|CB833651
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211240981|gb|FL293639.1|FL293639
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211117646|gb|FL049545.1|FL049545
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAASSACACAAAGGAGACAAAATTAAGEST: gi|211205079|gb|FL419130.1|FL419130
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAA-SACACAAAGGAGACAAAATTAAGEST: gi|211117644|gb|FL049543.1|FL049543
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAS-ACACAAAGGAGACAAAATTAAGEST: gi|211117643|gb|FL049542.1|FL049542
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211116864|gb|FL049538.1|FL049538
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAA-SACACAAAGGAGACAAAATTAAGEST: gi|211117642|gb|FL049541.1|FL049541
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211082659|gb|FL412223.1|FL412223
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211117649|gb|FL049548.1|FL049548
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|116823847|gb|EC867424.1|EC867424
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211116857|gb|FL049531.1|FL049531
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAASSACACAAAGGAGACAAAATTAAGEST: gi|211117645|gb|FL049544.1|FL049544
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211116862|gb|FL049536.1|FL049536
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAASSACACAAAGGAGACAAAATTAAGEST: gi|22542120|gb|BU092558.1|BU092558
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211079084|gb|FL380731.1|FL380731
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|61117989|gb|DN558950.1|DN558950
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|32865924|gb|CF005606.1|CF005606
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211453697|gb|FL370753.1|FL370753
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|149090104|gb|EE179400.2|EE179400
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211389797|gb|FL380127.1|FL380127
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|21987364|gb|BQ778892.1|BQ778892
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211122276|gb|FL373651.1|FL373651
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|149071444|gb|EE159839.2|EE159839
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|149005133|gb|EE039666.2|EE039666
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|60399310|gb|DN232124.1|DN232124
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|211059587|gb|FL481931.1|FL481931
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|149071445|gb|EE159840.2|EE159840
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGEST: gi|24773190|gb|CA408444.1|CA408444
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
EST: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG TACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
genomic: CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAGgtctgtgctc ... ttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAG
ggtatccttttgttctgtgtggcattgatttttctcttgcttgtcttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGGTTCACTATCGT
cattgat putative branch site (score: 635)
ttgatttttctcttgc CT-rich tract
attgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgagaacaggctgtggttttcttgttattacattttgaaaggaggtatccttttgttctgtgtggcattgatttttctcttgcttgtcttcctttcagTACAAGCCTGAGTCATGTACGCTGCAAGCACACAAAGGAGACAAAATTAAGGTTCACTATCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - caggctg
- - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - tacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttctg