Sequence
atgc intronic sequence ATGC exonic sequence...gatctattacgttttgagtttcatactgtatttatctgtgcatttctttggtttccaccagttcttttttttggttttatacatcttcctttatttgcagTTTCGTTGTAAAAGGAGTTGTTTGTAAGAAGAATGTTGCTCACCGGCGTATGTCATCAAAAAAGGAAAAGCCTCCAATCTTGATTCTTGGTGGTGCACTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 3'ss of exon 2
gatctattacgttttgagtttcatactgtatttatctgtgcatttctttggtttccaccagttcttttttttggttttatacatct-tcctttatttgcagTTTCGTTGTAAAAGGAGTTGTTTGTAAGAAGAATGTTGCTCACCGGCGTATGTCATCAAAAAAGGAAAAGCCTCCAATCTTGATTCTTGGTGGTGCACTC
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-ttttatcaagttattggcctttgaaatttcacactttattactttttcgtatcttattagtgctccatgtaagagcttcattttggttctttatttccagTTTTGTTGTAAAAGGAGTTGTTTGTAAGAAGAATGTTGCTCATCGGCGCATGGCGTCACGGAAAGAAAAGCCACGCATCCTGATCCTTGGTGGTGCACTT
upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G01590.1 (Glycine max), 3'ss of exon 4
gatctattacgttttgagtttcatactgtatttatctgtgcatttctttgg---tttccaccagttcttttttttggttttatacatcttcctttatttgcagTTTCGTTGTAAAAGGAGTTGTTTGTAAGAAGAATGTTGCTCACCGGCGTATGTCATCAAAAAAGGAAAAGCCTCCAATCTTGATTCTTGGTGGTGCACTC
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-ctctaatatactattaactctataatg-gttaaagagaatattttatgtgacatttcctgtattcactttgcctgacttcttggat-tcatattcttattagTGTGGTGGTTAAAGGAGTTGTTTGTAAGAAAAATGTGGCTCACCGGCGAATGACGTCAAAAGTGGATAAACCTCGCTTGTTGATCCTTGGAGGGGCTCTA
upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G05100.1 (Glycine max), 3'ss of exon 2
gatctattacgtt-ttgagtttcatactgtatttatctgtgcatttctt-tggt-ttccaccagttcttttttttggttttatacatcttcctttatttgcagTTTCGTTGTAAAAGGAGTTGTTTGTAAGAAGAATGTTGCTCACCGGCGTATGTCATCAAAAAAGGAAAAGCCTCCAATCTTGATTCTTGGTGGTGCACTC
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--tctaatatactattaaactctgtaatgggtcaaagagaatattttatgtgacattccttgtgttactttgcctgacttcttggat-tcatattcttattagTGTGGTGGTTAAAGGAGTTGTTTGTAAGAAAAATGTGGCTCACCGGAGAATGACGTCAAAAGTGGATAAACCTCGCTTGTTGATCCTTGGAGGGGCTCTA
upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G33240.1 (Arabidopsis thaliana), 3'ss of exon 3
gatctattacgttttgagtttca-tactgtatttatctgtgcatttctttggttt---ccaccagttcttttttttggttttatacatcttcctttatttgcagTTTCGTTGTAAAAGGAGTTGTTTGTAAGAAGAATGTTGCTCACCGGCGTATGTCATCAAAAAAGGAAAAGCCTCCAATCTTGATTCTTGGTGGTGCACTC
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----cttcatgtttttgttgtgaatattccgtgaggatttatatctctgtcgattggctggtaaacactgtattactgattgaactgggatggtatttttttagTATGGTCGTGAAAGGAGTTGTTTGTAAGAAAAATGTGGCTCATCGGCGAATGACTTCAAAGATCGAGAAGCCGCGTCTGCTAATCCTTGGAGGAGCTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttggtttccaccagttcttttttttggttttatacatcttcctttatttgcagTTTCGTTGTAAAAGGAGTTGTTTGTAAGAAGAATGTTGCTCACCGGCGTATGTCATCAAAAAAGGAAAAGCCTCCAATCTTGATTCTTGGTGGTGCACTC
catcttcctttattt CT-rich tract
ttttttttggttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatctattacgttttgagtttcatactgtatttatctgtgcatttctttggtttccaccagttcttttttttggttttatacatcttcctttatttgcagTTTCGTTGTAAAAGGAGTTGTTTGTAAGAAGAATGTTGCTCACCGGCGTATGTCATCAAAAAAGGAAAAGCCTCCAATCTTGATTCTTGGTGGTGCACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - -catactg
- - - - - - - - - - - - - - - - - - -gtgcatt