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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcagatgtttttcatctgcacacttttctactgcaagtttaaatgacagatgatgttcagtctctgcattctctcaactcatttgactatccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTCTGCCATATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGG

Basic information

species Zea mays
transcript GRMZM2G153704_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153704_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 3'ss of exon 2
gcagatgtttttcatctgcacacttttc-tactgcaagtttaaa-tgacagatgatgtt-cagtctctgcattctctcaactcatttgactatccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTCTGCCATATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGG
    ||  |  ||||  || ||   ||  |  ||||||   ||| ||  |  |  | |  |  | ||||| |  |||  | |  |   |||||   ||| ||||||| ||||| ||||||||||||||||||||||||| |||||| || |||  ||||||||||||||| |||||||||||||||||||||||| | |||||
--ttatagtgctcatgcgctcatgcttagttttgcaagccaaaactggaatgtagtttaactatatctgc-tgatcttgatttctaatactatttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAAGTGTTCTGCCATATGTGGGCGTTGCTTGTTTGGGGGCTATTTTATTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211360698|gb|FL393782.1|FL393782
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211212281|gb|FL401789.1|FL401789
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|31355374|gb|CD439731.1|CD439731
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|149082633|gb|EE171834.2|EE171834
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211506661|gb|FL391682.1|FL391682
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTTGGAGAAGGTTCAAGTTAAATCCTCAGGA
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATT-GGAGAAGGTTCAAGTTAAATCCTCAGGA
EST: gi|149083192|gb|EE172463.2|EE172463
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|31355588|gb|CD439945.1|CD439945
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|148996907|gb|EE035711.2|EE035711
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211063244|gb|FL401231.1|FL401231
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211327531|gb|FL370114.1|FL370114
EST:     G-TCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211266596|gb|FL404017.1|FL404017
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211066519|gb|FL419923.1|FL419923
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTC-ATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|31354767|gb|CD439124.1|CD439124
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|78078828|gb|DV507240.1|DV507240
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|148981335|gb|EE027589.2|EE027589
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|148977355|gb|EE026050.2|EE026050
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211261095|gb|FL369174.1|FL369174
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTA
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTA
EST: gi|211349168|gb|FL426325.1|FL426325
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|148971787|gb|EE022525.2|EE022525
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|148953947|gb|EC899333.2|EC899333
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211369268|gb|FL413710.1|FL413710
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211416246|gb|FL417246.1|FL417246
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|31355150|gb|CD439507.1|CD439507
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211298858|gb|FL392429.1|FL392429
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211485157|gb|FL401977.1|FL401977
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211244572|gb|FL131421.1|FL131421
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|78075828|gb|DV504262.1|DV504262
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211465272|gb|FL339432.1|FL339432
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211210064|gb|FL412311.1|FL412311
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211441205|gb|FL381373.1|FL381373
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|149055222|gb|EE156147.2|EE156147
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211157837|gb|FL370475.1|FL370475
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211153701|gb|FL418638.1|FL418638
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211471554|gb|FL402494.1|FL402494
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagatgatgttcagtctctgcattctctcaactcatttgactatccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTCTGCCATATGTTGGCGTTGCTTGTTTGGGGGCTATTCTGTTTGG
                                   atttgac  putative branch site (score: 4)
                                         ctatcctttt  CT-rich tract
                                               ttttaca  TA-rich tract