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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccttttgatgcagtatagttgcagccaggcacctgctaacacagcttcacttcttactccctctcactatatttccctttgtttgttgctgtagCCAATTACCAAACTTGTCACTCACTGGAAATTTGGCCTACAACATGAATAACTTGGGTTCATTAGTTGAGCT

Basic information

species Zea mays
transcript GRMZM2G153393_T01
intron # 2
splice site 3'
intron type U2

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 472

ATTCTCCTGGGCAGCTCACAGGTTGGCAGGCGAATGGGGGTGATCCTTGTGGCCAGTCATGGAAGGGCATTACTTGCTCAGGATCAGGGGTCACTAAAATgtgagccttt ... gttgctgtagCCAATTACCAAACTTGTCACTCACTGGAAATTTGGCCTACAACATGAATAACTTGGGTTCATTAGTTGAGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 633

ATTCTCCTGGGCAGCTCACAGGTTGGCAGGCGAATGGGGGTGATCCTTGTGGCCAGTCATGGAAGGGCATTACTTGCTCAGGATCAGGGGTCACTAAAATgtgagccttt ... gttgctgtagCCAATTACCAAACTTGTCACTCACTGGAAATTTGGCCTACAACATGAATAACTTGGGTTCATTAGTTGAGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 232

ATTCTCCTGGGCAGCTCACAGGTTGGCAGGCGAATGGGGGTGATCCTTGTGGCCAGTCATGGAAGGGCATTACTTGCTCAGGATCAGGGGTCACTAAAATgtgagccttt ... gttgctgtagCCAATTACCAAACTTGTCACTCACTGGAAATTTGGCCTACAACATGAATAACTTGGGTTCATTAGTTGAGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 536

ATTCTCCTGGGCAGCTCACAGGTTGGCAGGCGAATGGGGGTGATCCTTGTGGCCAGTCATGGAAGGGCATTACTTGCTCAGGATCAGGGGTCACTAAAATgtgagccttt ... gttgctgtagCCAATTACCAAACTTGTCACTCACTGGAAATTTGGCCTACAACATGAATAACTTGGGTTCATTAGTTGAGCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacagcttcacttcttactccctctcactatatttccctttgtttgttgctgtagCCAATTACCAAACTTGTCACTCACTGGAAATTTGGCCTACAACATGAATAACTTGGGTTCATTAGTTGAGCT
                                tttccctttgtttgtt  CT-rich tract
                          actatattt  TA-rich tract