1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcatagttatctgcagtgtatacttgttacaacttctgtatctgtccacaaaatgatcttggaatgatgcttgtttgctcctattcatgtctgatcgcagTTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAGCCAAGATTGATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACA
species | Zea mays |
transcript | GRMZM2G153332_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGC TTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAGEST: gi|32941845|gb|CF046664.1|CF046664
genomic: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGCgtaagtaggc ... ctgatcgcagTTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAG
EST: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGC TTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAGEST: gi|71299580|gb|DR785804.1|DR785804
genomic: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGCgtaagtaggc ... ctgatcgcagTTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAG
EST: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGC TTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAGEST: gi|78115933|gb|DV534321.1|DV534321
genomic: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGCgtaagtaggc ... ctgatcgcagTTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAG
EST: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGC TTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAGEST: gi|94477187|gb|EB706145.1|EB706145
genomic: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGCgtaagtaggc ... ctgatcgcagTTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAG
EST: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGC TTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAGEST: gi|148957123|gb|EC903107.2|EC903107
genomic: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGCgtaagtaggc ... ctgatcgcagTTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAG
EST: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGC TTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAG
genomic: TGTTGTATCCTCTGTCATATATTCAACAGTTGTTAACTTCACAAGAATGCgtaagtaggc ... ctgatcgcagTTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAG
ccacaaaatgatcttggaatgatgcttgtttgctcctattcatgtctgatcgcagTTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAGCCAAGATTGATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACA
gtctgat putative branch site (score: 49)
aaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatagttatctgcagtgtatacttgttacaacttctgtatctgtccacaaaatgatcttggaatgatgcttgtttgctcctattcatgtctgatcgcagTTGAGCGGAAAGATCAGAAGACCCTTGAAAAATTGAGGGCTGAGAGAAAAGCCAAGATTGATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - -tctgcag
- - - - - - - - - - - - - - - - - -ctgtatc
- - - - - - - - - - - - - - - - - - - - - - -ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg