Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgctcttcatacacaacctaacattaatctcttgtttgataaatcaatatactgaatgatacttaagatctctttgataaatatgatggagctgatgctaaaattacccccttgtgcagAATCCAGCTTGGACAACCAGCTACCGTTAAAGTTGCAGCCAACTTGATTAGGTTGCTAGCTTATCAGAACAAGGTATGTTCCATAGCATTCCAGCACGTA

Basic information

species Zea mays
transcript GRMZM2G152775_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152775_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g04800.1 (Oryza sativa), 3'ss of exon 3
-----------------------------------------------------------gtaagtttgctcttcatacacaacctaacattaatctcttgtttgataaatcaatatactgaatgatacttaagatctctttgataaatatgatggagctgatgctaaaattaccccct-tgtgcagAATCCAGCTTGGACAACCAGCTACCGTTAAAGTTGCAGCCAACTTGATTAGGTTGCTAGCTTATCAGAACAAGGTATGTTCCATAGCATTCCAGCACGTA
                                                           ||| | | || ||  ||  ||||    | | | |  | |  ||   |||  || |  |||    | ||||    || |  ||| |    | |||  |||  |||||||| || ||| |  | |||||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||| | |||||||||||||||                           
gtaagtttgttcttgtgtaattataatatatctattaatgctctctccttttaagctaagtaggatggcactgaatgaacaataataaacttagatttcattaattaacacagtgaactagtagttactgtgaatat--ttgctgtgcaagat--agcccatgctaaattttccctcgatttgcagAATTCAGCTTGGGCAACCAGCTACTGTGAAAGTTGCAGCCAACTTAATTAGGTTGTTGGCTTATCAGAACAAG---------------------------

upper sequence: GRMZM2G152775_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g53060.1 (Oryza sativa), 3'ss of exon 3
gtaagtt-tgctcttcatac--acaacctaacattaatctcttgtttgataaatcaatatactgaatgatacttaagatctctttgataaatatgatggagctgatgctaaaattaccccct-tgtgcagAATCCAGCTTGGACAACCAGCTACCGTTAAAGTTGCAGCCAACTTGATTAGGTTGCTAGCTTATCAGAACAAGGTATGTTCCATAGCATTCCAGCACGTA
||||||| | | ||| |  |  | |     |  || |        || ||| || | | | ||    | ||||  | |  |  |||||    | ||   || | |||||||| || ||| |  | | |||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||                           
gtaagttgtccccttgaagcgaataggaagaagttgaatgaactcttcatatat-attgttctactagttactggaaacat--ttgatgtgcaagac--agttcatgctaaattttccctccattttcagAATTCAGCTTGGGCAGCCAGCTACCGTGAAAGTTGCAGCCAACTTAATTAGGTTGTTGGCTTATCAGAACAAG---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32826830|gb|CD966508.1|CD966508
EST:     GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACC
genomic: GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgc ... ccttgtgcagAATCCAGCTTGGACAACCAGCTACC
EST: gi|32808848|gb|CD961082.1|CD961082
EST:     GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACCGTTA
genomic: GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgc ... ccttgtgcagAATCCAGCTTGGACAACCAGCTACCGTTA
EST: gi|32826298|gb|CD965976.1|CD965976
EST:     GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACCGTTA
genomic: GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgc ... ccttgtgcagAATCCAGCTTGGACAACCAGCTACCGTTA
EST: gi|76014048|gb|DT941218.1|DT941218
EST:     GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACCGTTAAAAGT-GCAGCCAACTTGATTA
genomic: GATACACAAGTCATTTCGGATTATGTACGCTATTTCCTCCACCAACACACgtaagtttgc ... ccttgtgcagAATCCAGCTTGGACAACCAGCTACCGTTAAA-GTTGCAGCCAACTTGATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatctctttgataaatatgatggagctgatgctaaaattacccccttgtgcagAATCCAGCTTGGACAACCAGCTACCGTTAAAGTTGCAGCCAACTTGATTAGGTTGCTAGCTTATCAGAACAAGGTATGTTCCATAGCATTCCAGCACGTA
                               tgctaaa  putative branch site (score: 2)
                                       ttaccccctt  CT-rich tract
        tttgataaatatgat  TA-rich tract