1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccatgttagcagtttggttcactatattagtgatgaatagaattaaacatttcttattttgcatttcgttaaccgtatgttgccttgatttacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCGGACAAGAATTTACTTTTACAATCAAAAGGGGAGTTGGGACTGATACGT
species | Zea mays |
transcript | GRMZM2G152686_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCEST: gi|211275907|gb|FL097618.1|FL097618
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
EST: ACNATGCATCACATGCTGACNATGTGATTGCTATCATGCTTGACACAAAG G-ACCCAGA-GTTCGAAGTGGAGAEST: gi|148961971|gb|EE012768.2|EE012768
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACC-AGAAGTTCGAAGTGGAGA
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCEST: gi|148957677|gb|EC903791.2|EC903791
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCEST: gi|211275899|gb|FL097610.1|FL097610
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
EST: CAATGCATTCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAEST: gi|211277710|gb|FL097626.1|FL097626
genomic: CAATGCAT-CACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCA
EST: ACAATGCATCACATGCTGACAATGNGATTGCTATCATGCTTGACACAAAG GGGACCAGAAAGTTCGAAAGTGGAGATTTGCCTCAACCGATATTTTCTGGAEST: gi|211275905|gb|FL097616.1|FL097616
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGG-ACCAGAA-GTTCGAA-GTGGAGATTTGCCTCAACCGATATTT-CTGGA
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCEST: gi|211275906|gb|FL097617.1|FL097617
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
EST: ACAATGCATCACATGCTGACNATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATEST: gi|148934386|gb|EC878416.2|EC878416
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGAT
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCEST: gi|5296084|gb|AI782959.1|AI782959
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCEST: gi|211275912|gb|FL097623.1|FL097623
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
EST: ACNATGCATCACATGCTGACNATGNGATTGCTATCATGCTTGACACCAAG GGACCAGAAGTTCGAAGTGGAGAEST: gi|71426208|gb|DR807258.1|DR807258
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGA
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCEST: gi|211279516|gb|FL097639.1|FL097639
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTEST: gi|67041095|gb|CO467350.1|CO467350
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATT
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTNCA-CCGATATTTCTGGAAAGEST: gi|211274093|gb|FL097607.1|FL097607
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCT-CAACCGATATTTCTGGAAAG
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTTGCCTCA-CCGATATTTCTGGAAAGEST: gi|211274094|gb|FL097608.1|FL097608
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTT-GCCTCAACCGATATTTCTGGAAAG
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGGACCAGAAAGTTCGAAAGTGGAGATTTGCCTEST: gi|211277719|gb|FL097635.1|FL097635
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGG-ACCAGAA-GTTCGAA-GTGGAGATTTGCCT
EST: ACAATGCATCACAGGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGT-CGAAGTGGAGATTTGCCTCA-CCGATATTTCTGGGAAGCEST: gi|148974537|gb|EE025324.2|EE025324
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCCGATATTTCTGGAAAGEST: gi|67025561|gb|CO454310.1|CO454310
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACC-GATATTTCTGGAAAG
EST: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAG GGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
genomic: ACAATGCATCACATGCTGACAATGTGATTGCTATCATGCTTGACACAAAGgttagtatta ... tacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGC
aacatttcttattttgcatttcgttaaccgtatgttgccttgatttacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCGGACAAGAATTTACTTTTACAATCAAAAGGGGAGTTGGGACTGATACGT
ttcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatgttagcagtttggttcactatattagtgatgaatagaattaaacatttcttattttgcatttcgttaaccgtatgttgccttgatttacaattcagGGACCAGAAGTTCGAAGTGGAGATTTGCCTCAACCGATATTTCTGGAAAGCGGACAAGAATTTACTTTTACAATCAAAAGGGGAGTTGGGACTGATACGT
-catgtta
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