Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagattatgcagtcttaagttcacgcgggagtataagtttgtgccattaacagcatgtttaactgattctcataaatatcgcgaatgcttgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG

Basic information

species Zea mays
transcript GRMZM2G152573_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G49340.1 (Glycine max), 3'ss of exon 2
tcagattatgcagtcttaagttcacgcgggagtataagtttgtgccattaacagcatgtttaactgattctcataaatatcgcgaatgcttgaat-----------tgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG
       ||  ||| || | || ||  |    |  || |     |||  |  ||  || | | |  | |  ||||| ||||  || |   |||             |||||||||||||| | ||||||||||| ||||||||||| || ||| | |||||||  ||||| || || ||  | ||||| |||||| | || ||    || |
------cata-agtgtttaattaacctgtttatccaaatacacccca--agtag--tgatgagcaaaatgccataactatcatgattttctgatcctgacttactctgcagATTCCACACTTAAGACCTGCTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCAGGACCGTAAACCGAGCCTATGGAGGTGTTTTATCCGGGGGAGCTG

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G37360.1 (Glycine max), 3'ss of exon 2
tcagattatgcagtct---taagttcacgcgggagtataagtttgtgccattaacagcatgtttaactgattctcataaatatcgcgaat--gcttgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG
    |||| |  || |    || | ||  |   ||||      || ||  | | ||  |||  |     ||| |||| | | |          ||| |  |||||||||||||| ||||||||||||| ||||||||||| || ||| |  ||||||  ||||| || || ||  | || || |||||| | || ||    || |
-ttaattaagttgtttatccaaatacatccctaagtagtga--tgagcattgagcaatatgccttgt--attatcatgattttttgatcctgacttaatctgcagATTCCACACTTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGCAGGACCGTAAACCGAGCCTACGGAGGTGTTTTATCAGGAGGAGCTG

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G11920.1 (Glycine max), 3'ss of exon 2
tcagattatgcagtcttaagttcacgcgggagta--taagtttgtgccattaacagcatgtttaactgattctcataaatatcg-cgaatgcttga--attgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG
 |||||  |    | ||   || | ||| | |    || ||||      ||   |  |   |||  |   | |   || ||       ||||||||  |||||||||||||||| |||| ||||| ||||||||||| || |||||  | || ||||  |||||||| || ||| ||||||| || ||| ||||||| | ||| |
-cagatatt---tttttggctttatgcgagggacattatgtttcctgtgtttgga-taaaattatatatctttttcaactactaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGATCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGCGGAGTTTTGTCTGGAAGTGCTG

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
tcagattatgcagtcttaagtt-cacgcgggagtataagtttgtgccattaacagcatgtttaactgattctcataaatatcgcgaatgcttga--attgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG
 |||||   |   | ||   || |  | ||||   || ||||      ||   |  |  ||  |    || |   || | |     ||||||||  |||||||||||||||| |||| ||||| |||||||||||||| |||||  | || ||||  |||||||| || ||| |||||||||| ||| | ||||| | ||| |
ccagat---gtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
lower sequence: AT3G28900.1 (Arabidopsis thaliana), 3'ss of exon 2
----tcagattatgcagtcttaagttcacg-cgggagtataagtttgtgccattaacagcatgtttaactgattctcataaatatcgcgaatgcttgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG
    ||| ||  |  | ||| ||    ||  |   |  | |    | |      |  |||||| ||   | |   | |    |     |  || ||    |||||||||| ||  ||||||||||||||||||| ||||| ||||||||||||||| | ||||| ||||||||| |||||||||||||||| |||||   ||| |
ttactcatatgct-taatctcaatagaacctcaaaaacacattcctttttttgaattagcatggtttcttaagctttact--ttctatgtttgttt--tctgcagATTCCGCATTTGAGACCTGCTGAGTACAAAAGGTCAAGGTTGGCAAGGAACGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGCTG

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
lower sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 2
----tcagattatgcagtcttaagttcacgcgggagtataagtttgtgccattaacagcatgt-ttaactgattctcataaatatcgcgaatgcttgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG
     |||| | | ||  |||  ||| ||  | || || ||   | |    |        ||| | || |  ||||  || |  ||     || |  |  |||||||||| ||||||||||||||||| ||||||||||| || ||| |||||||||  ||||||||||| ||  | ||||| |||||| |||| |||  ||| |
gtggccagagttttca--cttgtgtttacttgtgattagaaccatatattctgcttcaattgtgtcaattttttcttttacaattctt---tgatctatctgcagATTCCTCACCTGAGACCTGCTGAATACAAGAGGTCTAGATTGCCAAGGAACCGTAGGACTGTGAACCGGGCCTATGGAGGTGTTTTGTCGGGTGGTGCTG

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
tcagattatgcagtctta-agttcacgcgggagtataagtttgtgccattaacagcatgtttaactgattctcata---aatatcgcgaatgcttgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG
    | |   || | | | ||        | || | || || ||     ||     |  || |    ||| |   |    |||    |   |||     |||||||||| ||||| |||||||| || ||||||||||| || ||  | |||||||  ||||||||||| ||| | ||||| |||||  |||||||   ||| |
----actgcacattttgatagcatttattgtagcacaatttggtttgtatacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9733580|gb|BE512332.1|BE512332
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACATCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211381965|gb|FL156730.1|FL156730
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211379324|gb|FL156711.1|FL156711
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|58029444|gb|CX724871.1|CX724871
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|60398264|gb|DN231080.1|DN231080
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211379336|gb|FL156723.1|FL156723
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|5006078|gb|AI712140.1|AI712140
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|5108109|gb|AI739822.1|AI739822
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|15208979|gb|BI430863.1|BI430863
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211086698|gb|FL459706.1|FL459706
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|15100525|gb|BI396316.1|BI396316
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211381974|gb|FL156739.1|FL156739
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211384599|gb|FL156742.1|FL156742
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211384597|gb|FL156740.1|FL156740
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|60399836|gb|DN232646.1|DN232646
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|15100606|gb|BI396397.1|BI396397
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211415047|gb|FL462002.1|FL462002
EST:     AGCGCGCGAGCGGACCGAAGTGCCCATTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211379329|gb|FL156716.1|FL156716
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211379335|gb|FL156722.1|FL156722
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|71445662|gb|DR826712.1|DR826712
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211379328|gb|FL156715.1|FL156715
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211086700|gb|FL459708.1|FL459708
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211379333|gb|FL156720.1|FL156720
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211492551|gb|FL462928.1|FL462928
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211381961|gb|FL156726.1|FL156726
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|161589841|gb|EY962628.1|EY962628
EST:     CCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: CCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211379337|gb|FL156724.1|FL156724
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211379330|gb|FL156717.1|FL156717
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211379326|gb|FL156713.1|FL156713
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|6031583|gb|AI668485.2|AI668485
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|60397406|gb|DN230222.1|DN230222
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211381962|gb|FL156727.1|FL156727
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|67017356|gb|CO446105.1|CO446105
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|67011017|gb|CO439766.1|CO439766
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|15079950|gb|BI388889.1|BI388889
EST:     GGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: GGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|211381966|gb|FL156731.1|FL156731
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
EST: gi|30705607|gb|CD058843.1|CD058843
EST:     AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA                         ATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC
genomic: AGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGAgtatgtgccg ... tgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattaacagcatgtttaactgattctcataaatatcgcgaatgcttgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG
                     attctcataaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcagattatgcagtcttaagttcacgcgggagtataagtttgtgccattaacagcatgtttaactgattctcataaatatcgcgaatgcttgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG