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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagcccaaatggtatgatctacaaatttacatgtgccattttgatttttcttgctttctgatatgacttctaagacttgttttgacatatctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCTATGGCAAGTATGACGCTCGAGGATGTTCGTGTTAAAAGTGCAGATACTT

Basic information

species Zea mays
transcript GRMZM2G152438_T05
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149078224|gb|EE166978.2|EE166978
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211116954|gb|FL295789.1|FL295789
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|13237158|gb|BG355172.1|BG355172
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|78081711|gb|DV510123.1|DV510123
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         -TT----CTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|33467320|gb|CF244369.1|CF244369
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|50324428|gb|CO519554.1|CO519554
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211117745|gb|FL295806.1|FL295806
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|32808720|gb|CD960954.1|CD960954
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|91057156|gb|EB167574.1|EB167574
EST:     TGGTTCTGAAATGGCTGATGAGGACTCATCCGACTTCCCCCTTCTGCAGC                         GTTAGTTCTGCCAGAAAAATGAC
genomic: TGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACC-TTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGC-AGAAAA-TGAC
EST: gi|211116957|gb|FL295792.1|FL295792
EST:     TTGGCTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCC
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCC-
EST: gi|89761685|gb|DY689600.1|DY689600
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|78122154|gb|DV540538.1|DV540538
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211116962|gb|FL295797.1|FL295797
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|71333030|gb|DR803544.1|DR803544
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211377342|gb|FK960876.1|FK960876
EST:     TTGGTTCTTAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACAGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|71772486|gb|DR970418.1|DR970418
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|32796484|gb|CD948720.1|CD948720
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211116162|gb|FL295780.1|FL295780
EST:     TTGGCTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|71439167|gb|DR820217.1|DR820217
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211116963|gb|FL295798.1|FL295798
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAGAATGACAGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|32796008|gb|CD948244.1|CD948244
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|32798898|gb|CD951134.1|CD951134
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211116169|gb|FL295787.1|FL295787
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAGAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|148933116|gb|EC876752.2|EC876752
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211117743|gb|FL295804.1|FL295804
EST:     TTGGCTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|93015732|gb|EB641252.1|EB641252
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211116966|gb|FL295801.1|FL295801
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTNAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|71431621|gb|DR812671.1|DR812671
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|50324025|gb|CO519151.1|CO519151
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         -TT----CTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211117746|gb|FL295807.1|FL295807
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|149088304|gb|EE177398.2|EE177398
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|71433873|gb|DR814923.1|DR814923
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211116953|gb|FL295788.1|FL295788
EST:     TGGCTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCC
genomic: TGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTT-CTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCC
EST: gi|211116955|gb|FL295790.1|FL295790
EST:     TTGGCTCTGAGATGGCTGATGAGGACTCATCCGAMTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGAC
genomic: T-GGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGAC
EST: gi|71422888|gb|DR805891.1|DR805891
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|101389349|gb|EB816629.1|EB816629
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211377341|gb|FK960875.1|FK960875
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         -TT----CTGCAGAAAATGACAGTCAACCAGAAT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAAT
EST: gi|71436518|gb|DR817568.1|DR817568
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|76014565|gb|DT941735.1|DT941735
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|32797706|gb|CD949942.1|CD949942
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|32796232|gb|CD948468.1|CD948468
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211116168|gb|FL295786.1|FL295786
EST:     TTGGCTCTGAGATGGCTGATGAGGACTCATCCGASTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGT
EST: gi|78077674|gb|DV506108.1|DV506108
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|13237362|gb|BG355376.1|BG355376
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|32799036|gb|CD951272.1|CD951272
EST:     TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT
EST: gi|211117744|gb|FL295805.1|FL295805
EST:     TGGCTCTGAGATGGCTGATGAGGACTCATCCCGACTTCACCTTCTGCAGG                         GTTTAGTTCTGCAGAAAAATGACGGTCAA
genomic: TGGTTCTGAGATGGCTGATGAGGACTCATCC-GACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTT-AGTTCTGCAGAAAA-TGACGGTCAA
EST: gi|211117748|gb|FL295809.1|FL295809
EST:     TTGGCTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAA
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAA
EST: gi|32797377|gb|CD949613.1|CD949613
EST:     TTGGTTCTGAGATGGCTGGTGAGGACTCATCCGACTTCACCTTCTGCAGG                         GTTAGTTCTGCAGAAAATGACGGTCAACCAGAATTTCCTAAAGCCATTCCT
genomic: TTGGTTCTGAGATGGCTGATGAGGACTCATCCGACTTCACCTTCTGCAGGgtatgcacgc ... ctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttgctttctgatatgacttctaagacttgttttgacatatctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCTATGGCAAGTATGACGCTCGAGGATGTTCGTGTTAAAAGTGCAGATACTT
                                  ttttgac  putative branch site (score: 3)
                                          tatcttttttt  CT-rich tract
                                       acatatcttttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagcccaaatggtatgatctacaaatttacatgtgccattttgatttttcttgctttctgatatgacttctaagacttgttttgacatatctttttttagGTTAGTTCTGCAGAAAATGACGGTCAACCAGAATCTCCTAAAGCCATTCCTATGGCAAGTATGACGCTCGAGGATGTTCGTGTTAAAAGTGCAGATACTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT