1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtatatatactcctatacgaatacgacacgatagaacacgatcggagaagctgcagccagccaaagtcgagagtgccgctagctaatctgctgctggcgccgccgttatatatatgggtttgttttggtggctgcagGCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCTGGACCTGTCGGACTGGCTGGACGGCGGCGACGACGACGGGCCCTACGAC
species | Zea mays |
transcript | GRMZM2G152390_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCGTGAAGCGGGCGCGGCCCCACGAGCGCAACAAGACCCTAAAGTACAA GCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCTEST: gi|211359355|gb|FL211994.1|FL211994
genomic: TGCGTGAAGCGGGCGCGGCCCCACGAGCGCAACAAGACCCTAAAGTACAAgtatgtatat ... gtggctgcagGCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCT
EST: TGCGTGAAGCGGGCGCGGCCCCACGAGCGCAACAAGACCCTAAAGTACAA GCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCTEST: gi|211359354|gb|FL211993.1|FL211993
genomic: TGCGTGAAGCGGGCGCGGCCCCACGAGCGCAACAAGACCCTAAAGTACAAgtatgtatat ... gtggctgcagGCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCT
EST: TGCGTGAAGCGGGCGCGCCCCCACGAGCGCAACAAGACCCTAAAGTACAA GCTGGTCGCGAGCACGTGGAACGTGGGCGGCGTGCCGCCACCGGACGGGCTEST: gi|148955458|gb|EC901050.2|EC901050
genomic: TGCGTGAAGCGGGCGCGGCCCCACGAGCGCAACAAGACCCTAAAGTACAAgtatgtatat ... gtggctgcagGCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCT
EST: TGCGTGAAGCGGGCGCGGCCCCACGAGCGCAACAAGACCCTAAAGTACAA GCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCTEST: gi|76284409|gb|DV023977.1|DV023977
genomic: TGCGTGAAGCGGGCGCGGCCCCACGAGCGCAACAAGACCCTAAAGTACAAgtatgtatat ... gtggctgcagGCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCT
EST: TGCGTGAAGCGGGCGCGGCCCCACGAGCGCAACAAGACCCTAAAGTACAA GCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCT
genomic: TGCGTGAAGCGGGCGCGGCCCCACGAGCGCAACAAGACCCTAAAGTACAAgtatgtatat ... gtggctgcagGCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCT
ctaatctgctgctggcgccgccgttatatatatgggtttgttttggtggctgcagGCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCTGGACCTGTCGGACTGGCTGGACGGCGGCGACGACGACGGGCCCTACGAC
agctaat putative branch site (score: 3)
ttatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatatatactcctatacgaatacgacacgatagaacacgatcggagaagctgcagccagccaaagtcgagagtgccgctagctaatctgctgctggcgccgccgttatatatatgggtttgttttggtggctgcagGCTGTTCGCGAGCACGTGGAACGTGGGCGGCGTGGCGCCACCGGACGGGCTGGACCTGTCGGACTGGCTGGACGGCGGCGACGACGACGGGCCCTACGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA