Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctaacttcaatgttttgttctgtgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA

Basic information

species Zea mays
transcript GRMZM2G151549_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151549_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 3
----------gttctaacttcaatgttttgttctgtgttctttgttctttgt-gtacactatatcaccaaccatgttccttcctgatctttgg-gcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
           || | | ||     ||    |   ||    || || ||||| || |   | ||    ||    |     |  ||| |||||  |||||| ||  |||||||| |||| ||| | || | ||| ||||||||||||||||||  |||||||||||| ||||| ||||| ||||| ||||     || |
gttgttcttgtttgtcagttggtctttggagtagatgcatgttcttgtttgttgtgcttaaaatatttaatatagactggtggtgaactttgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAA

upper sequence: GRMZM2G151549_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G33770.1 (Glycine max), 3'ss of exon 3
----------------------------------------gttctaacttcaatgttttgttctgtgttctttgt-tctttgtgtacactatatcac---caaccatgttccttcctgatctttgg-gcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
                                        |||||   ||    |||    | ||   |   ||  | ||  |||    |||         |   || |    |  ||| ||| |  |||||| ||  |||||||| |||| ||| | || | ||| ||||||||||||||||||  |||||||||||| ||||| ||||| ||||| ||||     || |
gttgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgttatgcttaatatattaatatagactggtgaacttcgttgcagAATTTTGCATCACCTTTGAACCAGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAA

upper sequence: GRMZM2G151549_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT3G57290.1 (Arabidopsis thaliana), 3'ss of exon 3
gttctaacttcaa---tgttttgttctgtgttctttgttctttgtgtacactatatcaccaaccatgttccttcctgatc-tttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
|||   | || ||   | || |  | || |  |||||   |   | || | | |   |  |   ||| |   | |   |  |||   ||||  || ||||| ||  | || ||| | ||||||||||| ||| |||||||||||| |||||  ||||| ||||||||||| ||||| || |    |||||
gttagtatttaaaacttcttctagtttgcgacctttgaaatcaatataga-tgtgagagtatatatgctaactaccatttgttttttcagAGTTTTTCATCGCCGTTAAACCAGGTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAATGGAAGGACACAGATCA

upper sequence: GRMZM2G151549_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 3
---gttctaacttcaatgtt--ttgttctgtgttctttgttctttgtgtacactatatc-accaaccatgttccttcctgatctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
     | | |  |  || ||  ||| |||||    |||||| | | || |   |||||   | || ||||     || ||         ||||  | | | ||||||||||||||| | || |  || |||||||| |||||||||  ||| |||||||| || |||||||| |||||  |||     || |
gtcactgtcatatgcatattggttgctctgtacagtttgttttgt-tgcatgatatatttgctaatcatgagttctcttg---------cagAGTTACGCTTCACCTCTGAATCAGGTGCAAAGTAGAATATGGCTAATGCATTGGAGTCTCTTCATCTTTTTCAACCATGACAATGGGCGAACACACATAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148947189|gb|EC892527.2|EC892527
EST:     ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG                         AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: gi|149086591|gb|EE176135.2|EE176135
EST:     ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG                         AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: gi|148945927|gb|EC891220.2|EC891220
EST:     ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG                         AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: gi|71772604|gb|DR970532.1|DR970532
EST:     ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG                         AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: gi|211543296|gb|FL204964.1|FL204964
EST:     CGTAGCTTTGGAGGAAACTCA-CCGCTTGAAGGAAATAATTGATTCAAAG                         AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
genomic: CGTAGCTTTGGAGGAA-CTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: gi|148932020|gb|EC875324.2|EC875324
EST:     ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG                         AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
EST: gi|148942799|gb|EC887829.2|EC887829
EST:     ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG                         AACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT
genomic: ACGTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... ctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttctttgtgtacactatatcaccaaccatgttccttcctgatctttgggcagAACTTCTCATCACCTCTGAATCAGCTCCAGAACAGGATATGGCTGATGCATTGGGCTCTGTTCATCTTCTTTAACCATGAAAATGGTAGAAATGGGATCA
                                      tcctgat  putative branch site (score: 3)
                                 ttccttcctgatcttt  CT-rich tract
               actatat  TA-rich tract