Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76286364|gb|DV025932.1|DV025932EST: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAG GAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
genomic: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
EST:
gi|101392416|gb|EB818137.1|EB818137EST: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAG GAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
genomic: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
EST:
gi|86468272|gb|DY234642.1|DY234642EST: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAG GAGCTACTACCGGTGCACGCAGGACAGCTGCCGGGTGAAGAAGCGGGTGGA
genomic: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
EST:
gi|71763075|gb|DR961012.1|DR961012EST: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAG GAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
genomic: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
EST:
gi|78104134|gb|DV522552.1|DV522552EST: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAG GAGCTACTACCGGTGCACGCAGGACAACTGCCGG
genomic: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGG
EST:
gi|71448774|gb|DR829824.1|DR829824EST: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCCAG GAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
genomic: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
EST:
gi|29544415|gb|CB604795.1|CB604795EST: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAG GAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
genomic: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
EST:
gi|101392418|gb|EB818138.1|EB818138EST: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAG GAGCTACTACCGGTG
genomic: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTG
EST:
gi|76286365|gb|DV025933.1|DV025933EST: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAA GAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
genomic: AAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
EST:
gi|29544210|gb|CB604590.1|CB604590EST: CGCAGCACCCAAG GAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
genomic: CGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 3 RNA-Seq libraries.
Block sizes:
43 (upstream exon),
49 (downstream exon)
Score:
22GGTTCTGCTTCAAGACGATGAGCGACGTCGACGTGCTCGACGACGGCTACAAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGAGCGGCTCGCCGAGGACCCCCGCATGGTCATCACCACCTACGAGGGCCGC
Block sizes:
15 (upstream exon),
35 (downstream exon)
Score:
1GGTTCTGCTTCAAGACGATGAGCGACGTCGACGTGCTCGACGACGGCTACAAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGAGCGGCTCGCCGAGGACCCCCGCATGGTCATCACCACCTACGAGGGCCGC
Block sizes:
47 (upstream exon),
23 (downstream exon)
Score:
2GGTTCTGCTTCAAGACGATGAGCGACGTCGACGTGCTCGACGACGGCTACAAGTGGCGCAAGTACGGCCAGAAGGTCGTCAAGAACACGCAGCACCCAAGgtactcgctc ... ttgcatgcagGAGCTACTACCGGTGCACGCAGGACAACTGCCGGGTGAAGAAGCGGGTGGAGCGGCTCGCCGAGGACCCCCGCATGGTCATCACCACCTACGAGGGCCGC