1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacttgctaacctttaaatctgtgcagtagcactattcccgtttcttagcactatatctgcatttggctttcagtttgcacataaaggagatcatccattttttcatggcttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCATATGAAGCTACAGAAGATGGATTCTTCTCCATTGTTACCAAACAATGGCC
species | Zea mays |
transcript | GRMZM2G151254_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCATEST: gi|211023333|gb|FL324506.1|FL324506
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAACAACGCATEST: gi|74233717|gb|DT641631.1|DT641631
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCATEST: gi|211480401|gb|FL326620.1|FL326620
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCATEST: gi|13237156|gb|BG355170.1|BG355170
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA GATTTGCATCTGAGCAGAATGCEST: gi|71300865|gb|DR786463.1|DR786463
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGC
EST: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAA GATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
genomic: TCCAGAGACGGCCTGCTATATCAATGATCATCTTTTCCAGAATCTGAAAAgtaacttgct ... ttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCAT
ggctttcagtttgcacataaaggagatcatccattttttcatggcttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCATATGAAGCTACAGAAGATGGATTCTTCTCCATTGTTACCAAACAATGGCC
attttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttgctaacctttaaatctgtgcagtagcactattcccgtttcttagcactatatctgcatttggctttcagtttgcacataaaggagatcatccattttttcatggcttgtatttagGATTTGCATCTGAGCAGAATGCAATGTCTGCTGATGTACTGAAGAAGGCATATGAAGCTACAGAAGATGGATTCTTCTCCATTGTTACCAAACAATGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA