1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttctacatgcttctaaaaattgttactatgttagagtcatttgcattcatggctagcatattcttatgattttaatatcctctcttactttttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCCAATCACAGATAAAGAACAAGAACATGACCATAGATGTGAAAGCAAACT
species | Zea mays |
transcript | GRMZM2G150616_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|78121836|gb|DV540220.1|DV540220
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412254|gb|FL229040.1|FL229040
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGNACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|148936370|gb|EC880462.2|EC880462
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211414795|gb|FL229043.1|FL229043
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412252|gb|FL229038.1|FL229038
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|149110762|gb|EE190597.2|EE190597
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|148973802|gb|EE024938.2|EE024938
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|149088362|gb|EE177462.2|EE177462
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|91050628|gb|EB161046.1|EB161046
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|116815705|gb|EC858392.1|EC858392
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412253|gb|FL229039.1|FL229039
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|31348886|gb|CD433243.1|CD433243
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|14204290|gb|BG837967.1|BG837967
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACCCCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|32838380|gb|CD978058.1|CD978058
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412247|gb|FL229033.1|FL229033
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412248|gb|FL229034.1|FL229034
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412256|gb|FL229042.1|FL229042
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC RMTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412243|gb|FL229029.1|FL229029
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|33104065|gb|CF064025.1|CF064025
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412250|gb|FL229036.1|FL229036
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|32855345|gb|CD995026.1|CD995026
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|93013107|gb|EB638627.1|EB638627
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|94473288|gb|EB702246.1|EB702246
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412249|gb|FL229035.1|FL229035
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|32934430|gb|CF039242.1|CF039242
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412245|gb|FL229031.1|FL229031
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412255|gb|FL229041.1|FL229041
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211412242|gb|FL229028.1|FL229028
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCEST: gi|211061032|gb|FL204119.1|FL204119
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
EST: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC GCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
genomic: ACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTCgtaagtgctt ... tttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATC
ttcatggctagcatattcttatgattttaatatcctctcttactttttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCCAATCACAGATAAAGAACAAGAACATGACCATAGATGTGAAAGCAAACT
ctcttac putative branch site (score: 818)
tatcctctcttacttt CT-rich tract
atattcttatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctacatgcttctaaaaattgttactatgttagagtcatttgcattcatggctagcatattcttatgattttaatatcctctcttactttttcatgcagGCTGTAACTGCTTCTAGCACAAAGAAAGCTGACCTGATCCTTGGCGAGATCCAATCACAGATAAAGAACAAGAACATGACCATAGATGTGAAAGCAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -tacatgc
- - - - - - - - - - tgttact
- - - - - - - - - - - - - - - - - - - - -tgcattc