1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttaaccttcttttggtggagcatgagcatctttaaatactgtgatagcagacgagattcatgtgagtgggtcatggaatttaatgtaaatgtgtggtctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAGAG
species | Zea mays |
transcript | GRMZM2G149535_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAEST: gi|211217192|gb|FL385722.1|FL385722
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAEST: gi|211481824|gb|FL383632.1|FL383632
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAEST: gi|211329721|gb|FL371074.1|FL371074
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAEST: gi|211119381|gb|FL414343.1|FL414343
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAEST: gi|211434254|gb|FL404586.1|FL404586
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAEST: gi|71312662|gb|DR792853.1|DR792853
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAEST: gi|211390608|gb|FL418017.1|FL418017
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAEST: gi|78105364|gb|DV523782.1|DV523782
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAEST: gi|211085623|gb|FL417835.1|FL417835
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAEST: gi|149000676|gb|EE037886.2|EE037886
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCA
EST: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
genomic: TAAGTGGAGAAGCTCTTGCCGGCGACCACACAGAAAACATCGACCCAAAGgttaaccttc ... tctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTA
cgagattcatgtgagtgggtcatggaatttaatgtaaatgtgtggtctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAGAG
atttaat putative branch site (score: 16)
aatttaatgtaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaccttcttttggtggagcatgagcatctttaaatactgtgatagcagacgagattcatgtgagtgggtcatggaatttaatgtaaatgtgtggtctattgcagATTACAATGGCTATTGCAAGAGAGGTTGCTTCTGTCACCAAGCTAGGTGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT