Sequence
atgc intronic sequence ATGC exonic sequencegaaaaaaatttgttgcagccgggctgcaaacggcctggtttgcagcccggctgcaacaaatttttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G149481_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 3'ss of exon 2
----------------------------------------------------------------gaaaaaaatttgttgcagccgggctgcaaacggcctggtttgcagcccg-gctgcaacaaatt--tttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAG
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gtaaacaaaaactacattgttcaaatccatttcgccgccgtacggtcttctcttctctgtatgttctgtaagttcagaccctgaagacttcaacca--ttgatgtgcatgcagTGGTTCGAGGTGCTGGACGGCCTGCTGGGGAGGCATTGGAGAAACGTCGGCCTGGCCTTCAACTGCACCTTCCTACTCTTCGGCTCCGTCATCCAGCTCA-------------
upper sequence: GRMZM2G149481_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------------------------gaaaaaaatttgttgcagccgggctgcaa-----acggcctggtt--tgcagcccggctgcaacaaatttttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAG
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gttccactctcccattctcaaattctaaatattatattgtctctctgcaactttttatatatacttcgatctcaatgtatgtatctatctgtttttaacacttacaacttaactattgcagTG-GTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33467118|gb|CF244167.1|CF244167EST: TCTGCACTGCGCCTGCAGTGGTTCGAGGTGCTGGACGGGCTGCTCGGGAG GCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
genomic: TCTGCACTGCGCCTGCAGTGGTTCGAGGTGCTGGACGGGCTGCTCGGGAGgaaaaaaatt ... cgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgcaaacggcctggtttgcagcccggctgcaacaaatttttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAG
tttttttccgctc CT-rich tract
aacaaattttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaaaaaatttgttgcagccgggctgcaaacggcctggtttgcagcccggctgcaacaaatttttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA