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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgcctcgatttattcctttcccaaacccggctcatgtggaatcctccaacgctgggtcttccttttttggttactgaagtttttgtttggtccaacagGGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAA

Basic information

species Zea mays
transcript GRMZM2G148773_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148773_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g65330.2 (Oryza sativa), 3'ss of exon 2
--------------------------------------cttgcct---cgatttattcctttcccaaacccggct---catg-tggaat-cctccaacgctgggtcttcctt-------------ttttggttactgaagtttttgtttggtccaacagGGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAA
                                        || ||   |  | ||||| ||| | | |      |   |||| ||| ||  |  |||    |  |  | |||             |||    || ||||||||| |||   ||  |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||| || ||| | ||||||||||| ||
gttagcattgatctcactgcttctgcaaattataaacatgtgactgcacattctattcatttgctagaaatatgtatacatgatggtatatcaacaatatcgtattgtgcttaaagatgtactattttcttctattgaagttttggttatttctgacagGGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAACCGCTGCAAGGATCCTCAGTGGCATAACTTGGATCGCTACTTTGACAA

upper sequence: GRMZM2G148773_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA20G31400.1 (Glycine max), 3'ss of exon 5
-------------------------cttgcctcgatttattcctttcccaaacccggctcatgtggaatcctccaac-gctgggtcttccttttttggttactgaagtttttgtttgg-----tccaacagGGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAA
                          |   ||   |    | ||  |    |   ||  | | |    | |  | ||   || |  |    ||||   |  || | |   ||  ||       |   |||| |||||||||||| | ||||||   |||||||| || ||||||||| |||| || |||||||| ||||||||  || | ||||| ||||| ||
gtaggttatcatcgatattttcatgatcaacttagtagcattctccctttgatttggagcttattttcttcagctactaatgtgcttaaagttttcactatcttatgccatttcttatacttctttcacagAGAAGAGTTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAA

upper sequence: GRMZM2G148773_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G33040.1 (Glycine max), 3'ss of exon 2
--------------------------cttgcctcgatttattcctttcccaaacccggctcatgtggaatcctccaacgctgggtcttccttttttggttac-----tgaagtttttgtttggtccaacagGGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAA
                          | |  |  |      | || |  ||   || |  ||      ||  |      |  || |||  |    || | |      ||   ||||  |||       |||||| ||||||||||| ||||||   || ||  |||| ||||||||| |||  |||||||||||||||||||| ||| |||| |||||||| ||
gtaacactattgaattaaatcaaattcctaacaaggggggcttctgtttcatgacctgaccaacaactattttagtttaccaggactttataaaatgataaactttatgtgattttgatttatgtttccagGGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAA

upper sequence: GRMZM2G148773_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G00670.1 (Glycine max), 3'ss of exon 2
------------------------cttgcctcgatttattcctttccca-aacccggctcatgtggaatcctccaacgctgggtcttccttttttggttactgaagtttttgtt----tggtccaa-----cagGGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAA
                        | |  || |      | || |  || |||  |||  |  |  ||   |   | | |      | |||| |    | || || | | |||     || |  |      |||||| ||||||||||| ||||||   || ||  |||| ||||||||| |||  |||||||||||||||||||| ||| |||| |||||||| ||
gtaactattgaattaagtcaaattcctaactaggggggcttctgtttcataacaaggccaactttaaactatttta-gtttaccactactttataaaatgctaaactgtgtgtgattatgatttatgtttccagGGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAA

upper sequence: GRMZM2G148773_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 3'ss of exon 2
--------------------cttgcctcgatttattcctttcccaa---acccggctcatgtggaatcctccaacgctgggtcttcc-----ttttttggttactgaagtttttgtttggtccaacagGGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAA
                     |||| | ||||   || |||   ||    | |   |  |   |  |  |    |  | | | |||      |    |||| |||  | |||    ||       |||||||||  ||||| | ||||||  |||||| || || ||||| ||| | || || ||||||||||||||||| ||| |||| |||||||| ||
gtgaatactgaaacagaataattgctttgattatatcatttgttaatgggctcattttttcctggttatttttccaattgttattctaaaagtgaaatggtcacttcattttccaatta---tggcagGGAAGAACTGAAAATTTTTTCTGGAGAAGTGGTCCGTTTTGGGAATCGATGTAAAGATCCTCAGTGGCACAACTTGGACCGTTACTTTGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccaacgctgggtcttccttttttggttactgaagtttttgtttggtccaacagGGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAA
                                    tttttgttt  TA-rich tract