Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatctcgcccctctttgcgttgctcctgcgttcgaggtccttccatcattctgtggtgctaatggtgggttgtttggcgttgtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG

Basic information

species Zea mays
transcript GRMZM2G148744_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148744_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 2
gtaagatctcgcccctctttgcgttgctcctgcgttcgaggtcc-ttccatcattctgtggtgctaatggtgggttgtttggcgtt-gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
|||||||||||    | |     || | |    ||| |   ||  ||  |||  |||||| |  |  |  | | | |  ||  ||| || || |||||||| ||||||||||| |||||||| |||||||||||||||
gtaagatctcgatgatatcctttttccgcgatggtttggtttcggtttgatctgtctgtg-tagtggtttttgatgggatgttgtttgtgtgcgcagCGGCCAAGGCCATGGGGAGGGATCTCAGGGTCCACTTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931168|gb|CF035980.1|CF035980
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60355120|gb|DN222093.1|DN222093
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32928689|gb|CF033501.1|CF033501
EST:     ACTCGCAGGAGCCGGGCAACCCTANCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33101219|gb|CF061179.1|CF061179
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32943423|gb|CF048242.1|CF048242
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33093213|gb|CF053207.1|CF053207
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|21432117|gb|BQ547607.1|BQ547607
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33104020|gb|CF063980.1|CF063980
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|74239491|gb|DT647405.1|DT647405
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32943198|gb|CF048017.1|CF048017
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAAGGCCATGGGCAGGGATCTGAGGGTCCAC-TCNAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCT-AAGGCCATGGGCAGGGATCTGAGGGTCCACTTC-AAG
EST: gi|60355135|gb|DN222108.1|DN222108
EST:     GGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: GGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33104261|gb|CF064221.1|CF064221
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|91875294|gb|EB405251.1|EB405251
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32942812|gb|CF047631.1|CF047631
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32934925|gb|CF039737.1|CF039737
EST:     GCAGGAGCGGGGCAACCCTATCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: GCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|22520970|gb|BU079781.1|BU079781
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|22818802|gb|BU498892.1|BU498892
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGG-CATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60340332|gb|DN207305.1|DN207305
EST:     ACTCGCAGGAGCCGGCCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32945154|gb|CF049973.1|CF049973
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32943953|gb|CF048772.1|CF048772
EST:     ACTCGCAGGAGCCGGGTAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|22521316|gb|BU080127.1|BU080127
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|26558931|gb|CA831166.1|CA831166
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60355484|gb|DN222457.1|DN222457
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33103643|gb|CF063603.1|CF063603
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|18171748|gb|BM341588.1|BM341588
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60347732|gb|DN214705.1|DN214705
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33095116|gb|CF055110.1|CF055110
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33091359|gb|CF051353.1|CF051353
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|22545655|gb|BU098014.1|BU098014
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|91875293|gb|EB405250.1|EB405250
EST:     ACTCGCAGGAGCCGGGCAACCCTCCCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60354116|gb|DN221089.1|DN221089
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60352440|gb|DN219413.1|DN219413
EST:     CAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: CAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|15199183|gb|BI423701.1|BI423701
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33102460|gb|CF062420.1|CF062420
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33100771|gb|CF060731.1|CF060731
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33094600|gb|CF054594.1|CF054594
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33093631|gb|CF053625.1|CF053625
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32865052|gb|CF004734.1|CF004734
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|71427958|gb|DR809008.1|DR809008
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32865215|gb|CF004897.1|CF004897
EST:     GCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: GCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|14529506|gb|BI096639.1|BI096639
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33103068|gb|CF063028.1|CF063028
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33102589|gb|CF062549.1|CF062549
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAAT                         CGGCCAAGGCCATGGGAAGGGACCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|149040594|gb|EE046835.2|EE046835
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33102050|gb|CF062010.1|CF062010
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33091150|gb|CF051144.1|CF051144
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33094076|gb|CF054070.1|CF054070
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAAT                         CGGCCAAGGCCATGGGAAGGGACCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|9961446|gb|BE644429.1|BE644429
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33091079|gb|CF051073.1|CF051073
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32835546|gb|CD975224.1|CD975224
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60340738|gb|DN207711.1|DN207711
EST:     GCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: GCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32929210|gb|CF034022.1|CF034022
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33091674|gb|CF051668.1|CF051668
EST:     ACTCGCAGGAGCCGGTCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33103923|gb|CF063883.1|CF063883
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33101364|gb|CF061324.1|CF061324
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGCCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33103436|gb|CF063396.1|CF063396
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33102242|gb|CF062202.1|CF062202
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60345437|gb|DN212410.1|DN212410
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32928291|gb|CF033103.1|CF033103
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33093418|gb|CF053412.1|CF053412
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33098085|gb|CF058045.1|CF058045
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32929112|gb|CF033924.1|CF033924
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|61117750|gb|DN558711.1|DN558711
EST:     ACTCGCAGGAGCCGGGCAAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGC-AACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|5343124|gb|AI795534.1|AI795534
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32859556|gb|CD999237.1|CD999237
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33094187|gb|CF054181.1|CF054181
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32944957|gb|CF049776.1|CF049776
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60346660|gb|DN213633.1|DN213633
EST:     CAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: CAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|88748036|gb|DY532177.1|DY532177
EST:     GAGCCGGGCAACCCTACCAAGT                         CGGGTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: GAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|211463101|gb|FL238935.1|FL238935
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|78073553|gb|DV501987.1|DV501987
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33095112|gb|CF055106.1|CF055106
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33103656|gb|CF063616.1|CF063616
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33103610|gb|CF063570.1|CF063570
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|149042096|gb|EE047074.2|EE047074
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32944495|gb|CF049314.1|CF049314
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32837491|gb|CD977169.1|CD977169
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|30088324|gb|CB886529.1|CB886529
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33093849|gb|CF053843.1|CF053843
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGACCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32944831|gb|CF049650.1|CF049650
EST:     ACTCGCAGGAGCCGGGCAGCCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60395949|gb|DN228819.1|DN228819
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60343485|gb|DN210458.1|DN210458
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32943037|gb|CF047856.1|CF047856
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|32945299|gb|CF050118.1|CF050118
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|33093373|gb|CF053367.1|CF053367
EST:     ACTCGCAGGAGCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: ACTCGCAGGAGCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
EST: gi|60399765|gb|DN232575.1|DN232575
EST:     GCCGGGCAACCCTACCAAGT                         CGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
genomic: GCCGGGCAACCCTACCAAGTgtaagatctc ... gtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccttccatcattctgtggtgctaatggtgggttgtttggcgttgtctgtgcagCGGCTAAGGCCATGGGCAGGGATCTGAGGGTCCACTTCAAG
                    tgctaat  putative branch site (score: 2)