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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatatcttctcccccgattgattattgcgtttgcgtgtgcttcgggttttagtgcctttttttgtaatgttgtcttcctttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG

Basic information

species Zea mays
transcript GRMZM2G148130_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148130_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 3
-----------------gtcaatatcttctcccccgattgattattgcgtttgcgtgtgcttcgggttttagtgcct----ttttttgtaatgttgtcttcctttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG
                  ||  |||  | |      ||    | ||  ||||| || | || |  |   | |   |      |||  ||    | | |||  |||  || |||| |||||||| |||||||| || |||||||| ||||||||||| ||||| || ||||||||||
gtgggatttcttgccttctctttatactatttatttatactgtgtttagtttgggtatactgcatgcactggaatccaacgctttgggtttgatcgacttgtttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757762|gb|DY541903.1|DY541903
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|93282265|gb|EB674529.1|EB674529
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|76289947|gb|DV029515.1|DV029515
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|78092977|gb|DV521351.1|DV521351
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|78115400|gb|DV533788.1|DV533788
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|86475097|gb|DY241467.1|DY241467
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
EST: gi|76012087|gb|DT939257.1|DT939257
EST:     ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAG                         GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA
genomic: ACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCTCAGgtcaatatct ... tttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgtgcttcgggttttagtgcctttttttgtaatgttgtcttcctttgttgcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG
                                    ttgtcttcctttgtt  CT-rich tract
                       tttttttgtaatgtt  TA-rich tract