1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggattttcagtagatgtttcctagtgtttttatgatcttggacgaaagaaaaacttaatgaatgcaaaaaataatggtggatgaaacaacaacaaaaagGTGGGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGACCTACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCT
species | Zea mays |
transcript | GRMZM2G148130_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCAACCCGCCGGCCGGCTTCGAGCACAGGGTCACCGACAACCTCCAGAG GTGGGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGACEST: gi|76292123|gb|DV031691.1|DV031691
genomic: GTCAACCCGCCCGCCGGCTTCGAGCACAGGGTCACCGACAACCTCCAGAGgtgccgcttc ... caacaaaaagGTGGGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGAC
EST: GTCAACCCGCCCGCCGGCTTCGAGCACAGGGTCACCGACAACCTCCAGAG GTGGGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGACEST: gi|84980323|gb|DW530672.1|DW530672
genomic: GTCAACCCGCCCGCCGGCTTCGAGCACAGGGTCACCGACAACCTCCAGAGgtgccgcttc ... caacaaaaagGTGGGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGAC
EST: GTCAACCCGCCCGCTGGCTTCGAGCACAGGGTCACCGACAACCTCCAGAG GTGGGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGAC
genomic: GTCAACCCGCCCGCCGGCTTCGAGCACAGGGTCACCGACAACCTCCAGAGgtgccgcttc ... caacaaaaagGTGGGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGAC
aaagaaaaacttaatgaatgcaaaaaataatggtggatgaaacaacaacaaaaagGTGGGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGACCTACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCT
acttaat putative branch site (score: 76)
ttaatgaatgcaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggattttcagtagatgtttcctagtgtttttatgatcttggacgaaagaaaaacttaatgaatgcaaaaaataatggtggatgaaacaacaacaaaaagGTGGGTCGTCGATGTAGCCGGGGCACCAGGCACGCTCTACACCGGCGAGACCTACAAACTGCAGGTGGATTTCTCCGAGCATTATCCCATGGAGGCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - atgtttc
- - - - - - - - - - - - -tgttttt
- - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggatg