1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttctgaaggagctagagctggagctgttttgggaggaattggagccctgccaaacgagtcctaagtactaattttgctgttatttttgtcatacacagGTTTCATGACTGGAAATCAGAGCAATCTGTTTCTGTTATTTCAGATAGGGTAGTATCAGAAAAAGGGCATAACATCTTTGGCTTGTTAAAGGACAGAACA
species | Zea mays |
transcript | GRMZM2G148118_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTTGGAGACCAAAGAAGCCATGGCGGGCCGGGAGGAGAGATATGTGAG GTTTCATGACTGGAAATCAGAGCAATCTGTTTCTGTTATTTCAGATAGGGTEST: gi|89760124|gb|DY688673.1|DY688673
genomic: CCTTTGGAGACCAAAGAAGCCATGGCGGGCCGGGAGGAGAGATATGTGAGgtcagtctgg ... tcatacacagGTTTCATGACTGGAAATCAGAGCAATCTGTTTCTGTTATTTCAGATAGGGT
EST: CCTTTGGAGACCAAAGAAGCCATGGCGGGCCGGGAGGAGAGATATGTGAG GTTTCATGACTGGAAATCAGAGCAATCTGTTTCTGTTATTTCAGATAGGGTEST: gi|211299431|gb|FL430302.1|FL430302
genomic: CCTTTGGAGACCAAAGAAGCCATGGCGGGCCGGGAGGAGAGATATGTGAGgtcagtctgg ... tcatacacagGTTTCATGACTGGAAATCAGAGCAATCTGTTTCTGTTATTTCAGATAGGGT
EST: CCTTTGGAGACCAAAGAAGCCATGGCGGGCCGGGAGGAGAGATATGTGAG GTTTCATGACTGGAAATCAGAGCAATCTGTTTCTGTTATTTCAGATAGGGT
genomic: CCTTTGGAGACCAAAGAAGCCATGGCGGGCCGGGAGGAGAGATATGTGAGgtcagtctgg ... tcatacacagGTTTCATGACTGGAAATCAGAGCAATCTGTTTCTGTTATTTCAGATAGGGT
gccctgccaaacgagtcctaagtactaattttgctgttatttttgtcatacacagGTTTCATGACTGGAAATCAGAGCAATCTGTTTCTGTTATTTCAGATAGGGTAGTATCAGAAAAAGGGCATAACATCTTTGGCTTGTTAAAGGACAGAACA
tactaat putative branch site (score: 104)
tttttgtc putative PPT
taagtactaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctgaaggagctagagctggagctgttttgggaggaattggagccctgccaaacgagtcctaagtactaattttgctgttatttttgtcatacacagGTTTCATGACTGGAAATCAGAGCAATCTGTTTCTGTTATTTCAGATAGGGTAGTATCAGAAAAAGGGCATAACATCTTTGGCTTGTTAAAGGACAGAACA
ttttctg
- - - - - - - - - gctggag
- - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - ccctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctg