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...cactttattctggaatcctggatgtccttcgcttatggttgtgctatttttggttccatattttacacattcttattatcatctctataatctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG
species | Zea mays |
transcript | GRMZM2G147882_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACCACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTGAATG GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATCEST: gi|33466889|gb|CF243938.1|CF243938
genomic: TA-CACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATC
EST: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATG GTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGC
genomic: GTACACACCCATGCTAGATGAAATTCTTGATCCTGAAAATCAAGTTAATGgtaagttatt ... tctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGC
atttttggttccatattttacacattcttattatcatctctataatctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG
tctgtttc CT-rich tract
atattttacacattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactttattctggaatcctggatgtccttcgcttatggttgtgctatttttggttccatattttacacattcttattatcatctctataatctgtttcagGTGACTACAAGGAAGGATATTATATTGGAGTTGAGGTACCTGCAGATGATCCAGAAGCAAACAGGCCATTTTATGGTCCAAATCAGTGGCCTTCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA