Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctgatttaccgagtcgtcattcctgttgctggttgaagttgttggatttgatgtggtgccccgcgtgtgttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG

Basic information

species Zea mays
transcript GRMZM2G147726_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147726_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 3'ss of exon 2
gtgagttctgatttaccgagtcg-tcattcctgttgct------ggttgaagttgttggatt--tgatgtg-gtgccccgcgtg-------tgttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG
||| ||||     | |||| ||  |||||  | ||  |      ||||      |  || ||  ||| ||| ||||     ||        || |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
gtgggttccccgctcccgattccctcattttttttcttccattcggtttgctccgcgggtttggtgacgtgtgtgcttgttgttgttgcgttgctgcagCGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCG

upper sequence: GRMZM2G147726_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT2G24765.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagt-tctgatttaccgagt----cgtcattcctgttgctggttgaagttgttggatttgatg--tggtgccccgcgtgtg----ttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG
||  || ||| || |  ||| |      |   |  ||   || ||| | ||     ||||| | |  |  ||       | ||    ||||||| |||||||| ||||||||||| |||||||||||||| |||||||| || || |||||| | |
gtatgtatctaatctctcgattattgtatagattatggatctagtttatgtatcgtgattttacgaattttggttttgatctgatctttgcagCTATTGGATTTAACGTTGAGACTGTGCAGTACAACAATATCAAGTTTCAGGTCTGGGATTTAG

upper sequence: GRMZM2G147726_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv04s0008g07360.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------------------gtgagttctgatttaccgag-tcgtcattcctgttg---ctggttgaagttg--ttggatttgatgtggtgccccg---cgtgt-gttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG
                                    |   || || |||   | | |  | | |  ||||    ||   |   ||||  ||  | ||||| |      ||    ||| | | |||||||||||| || || || || || || ||||| |||||||||||||| ||||| |||||||| |
gtatgtgtttgcttttgggtttttgtttttgtttttttttttttggtttttgggggttttgagttttgttttatctatgtagtgttgatttccaattgatctcaaattcctattcgttttgatgcagCAATTGGGTTTAATGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGG

upper sequence: GRMZM2G147726_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv11s0052g01720.t01 (Vitis vinifera), 3'ss of exon 3
---------------gtgagttctgattta---ccgagtcgtcattcctg--ttgctggttgaagttgttggatttgatgtggtgccccgcgtgtgttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG
                |   || | ||||    || ||    ||  |  |  ||  || ||||| | || | ||    |||| ||      || |  |||||||||||| ||||| || || || || |||||||| || ||||| || |||||||||||||| |
ctttaaatttaaattttccctttttatttgaagcctaggaaccaaacgggcattagtgtttgaa-tcgtggaataatttgtg-tgtttatggtttcatgcagCAATTGGCTTCAATGTGGAAACAGTACAGTACAATAATATCAAATTTCAAGTATGGGATCTGG

upper sequence: GRMZM2G147726_T01 (Zea mays), 3'ss of exon 2
lower sequence: EDP03455 (Chlamydomonas reinhardtii), 3'ss of exon 2
-----------gtgagttctgatttaccgagtcgtcattcc--tgttgctggttgaagttgttggatttgatgtggtgccccgcgtgtgttgcagCA-ATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG-------------------------------------------
           | | ||   |      ||||  | |   ||  ||   |||  |   |   ||||     |||||  ||| |||        |  ||    || |||||||| ||||||||   |||||| ||||||||||||||||| |||||  | |                                           
ccacatcgctggggtgtgtgggacactcgagcggccccaccgatgcatctgactcctgcccttggcacgcatgtg-cgccgcgcac-caccacgccacgcagGCTTCAACGTGGAGACGGTAACGTACAAAAACATCAAGTTCCAAGTGTGGGACTTGGGAGGGCAGACCTCCATCCGGCCCTACTGGCGCTGCTACTTCCC

upper sequence: GRMZM2G147726_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ14920 (Selaginella moellendorffii), 3'ss of exon 2
gtgagttctgatttaccgagtcgtcattcctgttgctggttgaagttgttggatttgatgtggtgccccgcgtgtgttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG
                 |||| |  |||    ||   |||    | | | |      |  |    |  |  || | || |||| || |||||||| || || || || ||||||||||||||||| || |||||||||||  | |
---------------gtgagt-gagatttgcattttaggtcttggatctagctcacaagttctctcttcctgtctcttccagCGATAGGATTCAATGTAGAAACCGTACAGTACAACAACATCAAATTTCAAGTATGGGACTTGG

upper sequence: GRMZM2G147726_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ37645 (Selaginella moellendorffii), 3'ss of exon 2
gtgagttctgatttaccgagtcgtcattcctgttgctggttgaagttgttggatttgatgtggtgccccgcgtgtgttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG
                 |||| |  |||    ||   |||    | | | |      |  |    |  | ||| | || |||| || |||||||| || || || || ||||||||||||||||| || |||||||||||  | |
---------------gtgagt-gagatttgcattttaggtcttggatctagctcacaagttctctcttcccgtctcttccagCGATAGGATTCAATGTAGAAACCGTACAGTACAACAACATCAAATTTCAAGTATGGGACTTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32827477|gb|CD967155.1|CD967155
EST:     ATAGACTGCAAATGGGAGAGGTCGTCTCCACGATCCCGA                         CAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAG
genomic: ATAGACTGCAAATGGGAGAGGTCGTCTCCACGATCCCGAgtgagttctg ... tgtgttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgttgctggttgaagttgttggatttgatgtggtgccccgcgtgtgttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG
                         atttgat  putative branch site (score: 5)
                         atttgat  TA-rich tract