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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttgtgctgcttggaactcattttttcatctcttctgcgcgagactgtccggaagatgtttttttttgtgtgtttctctgtatgctgaattcgtccaattattacttggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCTTTCTCCTACAGAAA

Basic information

species Zea mays
transcript GRMZM2G147619_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91048161|gb|EB158579.1|EB158579
EST:     GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATG                         GAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT
genomic: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgc ... tggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT
EST: gi|86466024|gb|DY232397.1|DY232397
EST:     GTCTTGTTACTGTCTGCTGTTCCACAGTCGAAAAATCAAAAATGCTGATG                         GAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT
genomic: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgc ... tggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT
EST: gi|91876633|gb|EB406590.1|EB406590
EST:     GTCTTGTTACTGTCTGCTGTTCCACAGACGACGAATCACGAATGCTAATG                         GAGGAAGAATGCGTAGAGGCACCGTCGCACATCCACATTG
genomic: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgc ... tggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTG
EST: gi|76019186|gb|DT946356.1|DT946356
EST:     GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATG                         GAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT
genomic: GTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAATGgtgtttgtgc ... tggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgtgtgtttctctgtatgctgaattcgtccaattattacttggattgcagGAGGAAGAATGCGTAGAGGCACCGTCGTACATCCACATTGACAGCAACGCTTTCTCCTACAGAAA
                                   aattattactt  TA-rich tract