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gtaagagtttttaacttttagatgttaactgaaaggtttccctaccatgaccttaaatatacactttaatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAGATATCTGCATCAACTGTGCTGGAATTGCTAATAAAACACTAGTTTATGA
species | Zea mays |
transcript | GRMZM2G147191_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAG ATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAGEST: gi|211092469|gb|FL162379.1|FL162379
genomic: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAGgtaagagttt ... taatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAG
EST: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAG ATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAGEST: gi|91868066|gb|EB399902.1|EB399902
genomic: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAGgtaagagttt ... taatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAG
EST: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAG ATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAGEST: gi|148957626|gb|EC903733.2|EC903733
genomic: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAGgtaagagttt ... taatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAG
EST: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAG ATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAGEST: gi|148941301|gb|EC886203.2|EC886203
genomic: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAGgtaagagttt ... taatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAG
EST: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAG ATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAGEST: gi|71301436|gb|DR786749.1|DR786749
genomic: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAGgtaagagttt ... taatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAG
EST: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAG ATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAGEST: gi|101384704|gb|EB814398.1|EB814398
genomic: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAGgtaagagttt ... taatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAG
EST: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAG ATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAG
genomic: TCTTAGAATTCCATCTTCAATATTTGTTAAGTGTGATGTTAGTAATGCAGgtaagagttt ... taatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAG
atgttaactgaaaggtttccctaccatgaccttaaatatacactttaatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAGATATCTGCATCAACTGTGCTGGAATTGCTAATAAAACACTAGTTTATGA
ttaaatatacacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtttttaacttttagatgttaactgaaaggtttccctaccatgaccttaaatatacactttaatatgcagATAATCTTGCTGCTTGTTTTGAGAAGCATGTACAGACATACAATGGACTAGATATCTGCATCAACTGTGCTGGAATTGCTAATAAAACACTAGTTTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA