Sequence
atgc intronic sequence ATGC exonic sequencegtaagcttctgtgcacttatttacgtactgtttactgtatttcagccccacgctggagagatttaacacctgctttcgttcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGATCTCAGAGATTCATTTGATATTCTTGAGCTGGAGTGTTCAGTTGACGTGA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|91875937|gb|EB405894.1|EB405894EST: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGG GTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCG
genomic: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGGgtaagcttct ... tcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCG
EST:
gi|211309930|gb|FL436459.1|FL436459EST: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGG GTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGAT
genomic: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGGgtaagcttct ... tcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtatttcagccccacgctggagagatttaacacctgctttcgttcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGATCTCAGAGATTCATTTGATATTCTTGAGCTGGAGTGTTCAGTTGACGTGA
atttaac putative branch site (score: 3)
cctgctttcgttcct CT-rich tract
agatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcttctgtgcacttatttacgtactgtttactgtatttcagccccacgctggagagatttaacacctgctttcgttcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGATCTCAGAGATTCATTTGATATTCTTGAGCTGGAGTGTTCAGTTGACGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA