1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tacgtgtttgtgcccaaaatttttactctgttagaattatttgcatgcatgactatcgaattcttatgtttttaatatcctctgttactctttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCCATTCACAGATAAAGAACAAGAACATGACCGTAGATGTGAAAGCAAACT
species | Zea mays |
transcript | GRMZM2G146670_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|31354274|gb|CD438631.1|CD438631
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|211283575|gb|FL005708.1|FL005708
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|211283569|gb|FL005702.1|FL005702
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|32910365|gb|CF015177.1|CF015177
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|32945222|gb|CF050041.1|CF050041
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|33093487|gb|CF053481.1|CF053481
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|13562162|gb|BG550382.1|BG550382
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGTTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|32915544|gb|CF020356.1|CF020356
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|32917034|gb|CF021846.1|CF021846
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACGGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCCGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|32913382|gb|CF018194.1|CF018194
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|211283572|gb|FL005705.1|FL005705
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|211283577|gb|FL005710.1|FL005710
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|31354722|gb|CD439079.1|CD439079
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|15208686|gb|BI430570.1|BI430570
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|211283576|gb|FL005709.1|FL005709
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|211281770|gb|FL005699.1|FL005699
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|13557920|gb|BG549276.1|BG549276
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGTTTCTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|74243487|gb|DT651401.1|DT651401
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|211283573|gb|FL005706.1|FL005706
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|30307135|gb|CD001808.1|CD001808
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|33094138|gb|CF054132.1|CF054132
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|32910975|gb|CF015787.1|CF015787
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|211283570|gb|FL005703.1|FL005703
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|32912387|gb|CF017199.1|CF017199
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|20208325|gb|BQ134414.1|BQ134414
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGATTGCTGACCTGATCTTCAGTGAGATCEST: gi|31355357|gb|CD439714.1|CD439714
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTC GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|211281772|gb|FL005701.1|FL005701
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCEST: gi|32936145|gb|CF040957.1|CF040957
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
EST: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTT GCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
genomic: ACCAGACAGACCACAAGTTCACCCTCACTACCTACAGCTCCAATGGCGTTgtaagtcctc ... tttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATC
tgcatgactatcgaattcttatgtttttaatatcctctgttactctttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCCATTCACAGATAAAGAACAAGAACATGACCGTAGATGTGAAAGCAAACT
ttttaat putative branch site (score: 699)
tcctctgttactcttt CT-rich tract
aattcttatgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgtgtttgtgcccaaaatttttactctgttagaattatttgcatgcatgactatcgaattcttatgtttttaatatcctctgttactctttcatgcagGCTGTCACTGCTACTAGCACAAAGAAAGCTGACCTGATCTTCAGTGAGATCCATTCACAGATAAAGAACAAGAACATGACCGTAGATGTGAAAGCAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - tgtttgt
- - - - - - - - - - - - - - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttt