Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttcatcctcgattggttgctcagttgacctgaagcgtcctttctttttcagtcatacttttttttttctctcacacgaactcgtactccatttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC

Basic information

species Zea mays
transcript GRMZM2G146374_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33285799|gb|CF075594.1|CF075594
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|60400981|gb|DN233788.1|DN233788
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|440773|gb|T14794.1|T14794
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|31364283|gb|CD448638.1|CD448638
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|38229847|gb|CF920160.1|CF920160
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|32911553|gb|CF016365.1|CF016365
EST:     GAACGACGGGGTGCAGGAGTTCTTCGTGGAATTCAAGGGCCCGGTCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|34391369|gb|CF384597.1|CF384597
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211536458|gb|FL178297.1|FL178297
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211536457|gb|FL178296.1|FL178296
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|32944457|gb|CF049276.1|CF049276
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|440687|gb|T14708.1|T14708
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTNGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|33285782|gb|CF075577.1|CF075577
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|71325319|gb|DR799337.1|DR799337
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|453315|gb|T15289.1|T15289
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211073942|gb|FL168131.1|FL168131
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|31628353|gb|CD526566.1|CD526566
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211536455|gb|FL178294.1|FL178294
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|32910699|gb|CF015511.1|CF015511
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|32856672|gb|CD996353.1|CD996353
EST:     GAACGACGGGATGCAGGAATTCCTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|4573150|gb|AI438501.2|AI438501
EST:     GAACGACGGGATGCAGGAATTTTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|33771123|gb|CF272784.1|CF272784
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|38229799|gb|CF920112.1|CF920112
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211073944|gb|FL168133.1|FL168133
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|32856545|gb|CD996226.1|CD996226
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|71432138|gb|DR813188.1|DR813188
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|71769127|gb|DR967064.1|DR967064
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|83278687|gb|DV942695.1|DV942695
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|32856738|gb|CD996419.1|CD996419
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATTTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211536461|gb|FL178300.1|FL178300
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         G-ATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|16925233|gb|BM078301.1|BM078301
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211073937|gb|FL168126.1|FL168126
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211073943|gb|FL168132.1|FL168132
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|32912993|gb|CF017805.1|CF017805
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|78082922|gb|DV511315.1|DV511315
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211536462|gb|FL178301.1|FL178301
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211539455|gb|FL178302.1|FL178302
EST:     GAACGACGGGAT-CAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211536459|gb|FL178298.1|FL178298
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|211073941|gb|FL168130.1|FL168130
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
EST: gi|511342|gb|T23320.1|T23320
EST:     GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAA                         GTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT
genomic: GAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 205

GATGATGAGCGACTACAAGGTGGAGATGGTGAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 641

GATGATGAGCGACTACAAGGTGGAGATGGTGAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 725

GATGATGAGCGACTACAAGGTGGAGATGGTGAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 329

GATGATGAGCGACTACAAGGTGGAGATGGTGAACGACGGGATGCAGGAATTCTTCGTCGAATTCAAGGGCCCGGCCGAAAgtaataaccc ... catttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcagtcatacttttttttttctctcacacgaactcgtactccatttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC
                        ctctcac  putative branch site (score: 329)
                                          ctccattt  putative PPT
        tcatactttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcttcatcctcgattggttgctcagttgacctgaagcgtcctttctttttcagtcatacttttttttttctctcacacgaactcgtactccatttggtagGTATCTACCAAGGTGGTGTCTGGAAGGTTCGGGTAGAACTGCCTGATGCATACCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCC

-cttcatc
- - - - - - - tggttgc
- - - - - - - - - - - - - - - ctgaagc