1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cattctagctgctgctttgaattttattccttcacgcagaaatgagggacttctgaatttctctaattcactgtttactgcctctccttttgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG
species | Zea mays |
transcript | GRMZM2G146206_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|71757929|gb|DR955866.1|DR955866
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|16919933|gb|BM074427.1|BM074427
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|14243822|gb|BG841520.2|BG841520
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|24767602|gb|CA402746.1|CA402746
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|211116000|gb|FL153558.1|FL153558
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|149005098|gb|EE039627.2|EE039627
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|24769561|gb|CA404690.1|CA404690
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: AATGGATGTTGTTGCTGCCCAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|149097485|gb|EE183357.2|EE183357
genomic: AATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|16927318|gb|BM080387.1|BM080387
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: AGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|149105683|gb|EE291241.2|EE291241
genomic: AGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|32909130|gb|CF013942.1|CF013942
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|6012502|gb|AW061939.1|AW061939
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|211291624|gb|FL459848.1|FL459848
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGNATGTGAACCAGTTTGGGEST: gi|148995362|gb|EE034576.2|EE034576
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|71330644|gb|DR802095.1|DR802095
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|83278303|gb|DV942311.1|DV942311
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|110517584|gb|EE022171.1|EE022171
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG NEST: gi|110517584|gb|EE022171.1|EE022171
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcag-
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG NEST: gi|16927255|gb|BM080324.1|BM080324
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcag-
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|18178250|gb|BM379460.1|BM379460
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: ATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|211297519|gb|FL438922.1|FL438922
genomic: ATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|31628067|gb|CD526427.1|CD526427
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGEST: gi|110960987|gb|EE181039.1|EE181039
genomic: GGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
gggacttctgaatttctctaattcactgtttactgcctctccttttgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG
ctctaat putative branch site (score: 3)
tttactgcctctcctt putative PPT
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattctagctgctgctttgaattttattccttcacgcagaaatgagggacttctgaatttctctaattcactgtttactgcctctccttttgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG