1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tactataatgatattgatgaaggaaccaagatgaatgttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
species | Zea mays |
transcript | GRMZM2G145280_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211389705|gb|FL262572.1|FL262572
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211389702|gb|FL262569.1|FL262569
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAGGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|15198791|gb|BI423486.1|BI423486
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211279209|gb|FL194214.1|FL194214
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211281009|gb|FL194228.1|FL194228
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|60340124|gb|DN207097.1|DN207097
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: CCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|89761946|gb|DY689760.1|DY689760
genomic: CCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211426206|gb|FL392503.1|FL392503
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211277402|gb|FL194200.1|FL194200
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|213171408|gb|FM192327.1|FM192327
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|60337043|gb|DN204016.1|DN204016
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|30705140|gb|CD058672.1|CD058672
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|8577151|gb|BE129788.1|BE129788
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211281011|gb|FL194230.1|FL194230
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211281010|gb|FL194229.1|FL194229
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTNCTGGTCCTCEST: gi|149112712|gb|EE191403.2|EE191403
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211281012|gb|FL194231.1|FL194231
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|74234820|gb|DT642734.1|DT642734
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|71766827|gb|DR964764.1|DR964764
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211389701|gb|FL262568.1|FL262568
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|76292773|gb|DV032341.1|DV032341
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|29947149|gb|CB816506.1|CB816506
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|14569404|gb|BI097727.1|BI097727
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|78106398|gb|DV524816.1|DV524816
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|74237761|gb|DT645675.1|DT645675
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|32912483|gb|CF017295.1|CF017295
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211271424|gb|FK945754.1|FK945754
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211281013|gb|FL194232.1|FL194232
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211441593|gb|FK945760.1|FK945760
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|37416945|gb|CF646124.1|CF646124
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|60356573|gb|DN223546.1|DN223546
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: CAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211389707|gb|FL262574.1|FL262574
genomic: CAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|28873512|gb|CB329492.1|CB329492
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|74234821|gb|DT642735.1|DT642735
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|8665447|gb|BE186263.1|BE186263
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|211389706|gb|FL262573.1|FL262573
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACGTGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCEST: gi|60340943|gb|DN207916.1|DN207916
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
tactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
ttctaat putative branch site (score: 816)
aataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactataatgatattgatgaaggaaccaagatgaatgttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
- - - - - - - tgatgaa
- - - - - - - - - - - gaaccaa
- - - - - - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgta