Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactataatgatattgatgaaggaaccaagatgaatgttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG

Basic information

species Zea mays
transcript GRMZM2G145280_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 2
--------------------------------------------tactataatgatattgatgaaggaaccaagatgaatgttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
                                            | || |  |  | ||  |   || |  ||||| |   |  | |  || |  ||  || ||| ||    | | |   |    ||   | ||||     |||||||||| ||||| ||||||||||| |||||| | || || ||||| |||||  | |||||||| ||  | || ||||| || |||||||||||    ||
gtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtctt--ttgtggtaaaaagatcagcttgagttagtatt--atggttacttttaattctttgacatgttattgctgtattctt----cagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 3
--------------------------------------------tactataatgatattgatgaaggaaccaagatgaatg--ttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
                                            |||  |  |  | ||  |   |  |  ||||| ||    ||   ||    |  ||  |||||| ||    | | |   |   ||||     | | | | |||||||||| ||||| |||||||||||||||||| | || || ||||| |||||  | |||||||| ||  | || ||||| || |||||||||||    ||
gtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtctt--ttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtat-tcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTCTCAGGCCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
---------------------------------tactataatgata-ttgatgaaggaaccaagatg-aatgttcgcttttactcaataattgcttctacactt-ctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
                                  | | |    ||| || || ||  || ||   |  |||  | | || | |   | || ||  || ||      || || ||| | |   ||     | | ||||||| || ||||||||||| ||||| |||||  | || |||||||| |||||  | || ||||||||  |||||||| | || |||||||||||    ||
gtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttg-ttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G17370.2 (Glycine max), 3'ss of exon 1
---------------------------------------------------------tactataatgatattgatgaaggaaccaagatgaatgttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
                                                         |    ||||  |  | ||  | ||| |||||   |  ||   || |   ||||  |||  | ||   || || || ||| |     |      | | ||||||| || ||||||||||| ||||| |||||| | || ||||||||  ||||  | || ||||||||  |||||||| | || |||||||||||    ||
gtaatttaacctaatctcttgctcttttttaacattgtaatacttaattaatcagtctggcttaatacttgtaattcaagaaacaagaatcagcttgagttgtcaacaattgttgtgtgtatctttatattttgactcgtgggtaacactttttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCCAGGCCTACTGCTGGATCTCTCAGGCCTATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 3'ss of exon 2
tactataatgatattgatgaaggaaccaagatgaatgttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgtt---ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
     || |  || | |||     ||       | |||    |||   |  | | ||    ||||| | ||  ||||  | | | |||||    ||||  ||||  | |||||||||||||||||||| ||||| || || ||| |||| ||||| |||||  |||| ||  | |||||| | |||||||||||||||   ||
---gttagtagtagtaatgtcaacacttctgatattgtcatgtttcgtttta-agtttacactacaat-ctctttgggtcttattatgttatgttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAGACTCTTAAGTACAACATGAAGGTCAG

upper sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 3'ss of exon 1
tactataatgatattgatgaaggaaccaagat---gaatgttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
    ||  |    ||  |  ||      | ||   |||| || | |   |    ||  |   ||         ||| | |    |  |     |  | | ||||| | || ||||| ||||||||||| ||||| ||||| |||| ||| || || |||||  |||||||  | || ||||| ||||||||||||||    ||
--tcatgtttgattttgtccagtcttttatattttgaatatttg-taccatgtgatgctattttaactgagcttaaattggtttttcatgaaaccatctccagCTAGACAGAAGAAAGCTGTGAAGATTTTCCCTCGCCCCACTGTTGGACCACTTCGCCCACTTGTTCATGGACAAACTTTGAAGTACAACATGAAAGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211389707|gb|FL262574.1|FL262574
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|74237761|gb|DT645675.1|DT645675
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|5740214|gb|AI947904.1|AI947904
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389701|gb|FL262568.1|FL262568
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|8665447|gb|BE186263.1|BE186263
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389703|gb|FL262570.1|FL262570
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|76292773|gb|DV032341.1|DV032341
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60356573|gb|DN223546.1|DN223546
EST:     CAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: CAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|149112712|gb|EE191403.2|EE191403
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60355713|gb|DN222686.1|DN222686
EST:     CGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: CGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389704|gb|FL262571.1|FL262571
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|17930700|gb|BM267660.1|BM267660
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211279209|gb|FL194214.1|FL194214
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281009|gb|FL194228.1|FL194228
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|71766827|gb|DR964764.1|DR964764
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60396901|gb|DN229720.1|DN229720
EST:     CCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: CCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211426206|gb|FL392503.1|FL392503
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211311383|gb|FL406198.1|FL406198
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|15198791|gb|BI423486.1|BI423486
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60340124|gb|DN207097.1|DN207097
EST:     CCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: CCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211277402|gb|FL194200.1|FL194200
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211129397|gb|FL066373.1|FL066373
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|29947149|gb|CB816506.1|CB816506
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|8577151|gb|BE129788.1|BE129788
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211271424|gb|FK945754.1|FK945754
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|32912483|gb|CF017295.1|CF017295
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211129398|gb|FL066374.1|FL066374
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389705|gb|FL262572.1|FL262572
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281011|gb|FL194230.1|FL194230
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|18649359|gb|BM498178.1|BM498178
EST:     TGTCAAGACATGG-TCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|28873512|gb|CB329492.1|CB329492
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60340943|gb|DN207916.1|DN207916
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|17930981|gb|BM267941.1|BM267941
EST:     AGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCACCGCCCGACTGCTGGTCCTC
genomic: AGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|18170256|gb|BM340096.1|BM340096
EST:     CAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: CAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211387079|gb|FL262565.1|FL262565
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281010|gb|FL194229.1|FL194229
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTNCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281012|gb|FL194231.1|FL194231
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389702|gb|FL262569.1|FL262569
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAGGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|89761946|gb|DY689760.1|DY689760
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60400340|gb|DN233147.1|DN233147
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|60337043|gb|DN204016.1|DN204016
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|14569404|gb|BI097727.1|BI097727
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|71300935|gb|DR786496.1|DR786496
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|20208265|gb|BQ134354.1|BQ134354
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCATGCAGAGACGCCGCATTG                         CTCGTCAAATGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|30705140|gb|CD058672.1|CD058672
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|32913773|gb|CF018585.1|CF018585
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|78106398|gb|DV524816.1|DV524816
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211281013|gb|FL194232.1|FL194232
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|213171408|gb|FM192327.1|FM192327
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGACGCCGCATTG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211441593|gb|FK945760.1|FK945760
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|71766826|gb|DR964763.1|DR964763
EST:     ATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: ATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|74234821|gb|DT642735.1|DT642735
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|37416945|gb|CF646124.1|CF646124
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211211634|gb|FL368405.1|FL368405
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|17930580|gb|BM267540.1|BM267540
EST:     ACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: ACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|211389706|gb|FL262573.1|FL262573
EST:     TGTCAAGACGTGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
EST: gi|74234820|gb|DT642734.1|DT642734
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcac ... ctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG
                      ttctaat  putative branch site (score: 2)
     aataatt  TA-rich tract