1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcaaaattttggctgctgggcttatgcatagtgtatcaaattttgttgtgaagttggatgcttgatgtgcttaatttgtttttccgatggtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGGCCAAGGTGAAGTTCAATGTGAATCGTGTTGACAACATGGTGATCCAGG
species | Zea mays |
transcript | GRMZM2G144995_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|60343903|gb|DN210876.1|DN210876
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|61117658|gb|DN558619.1|DN558619
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|22472694|gb|BU037174.1|BU037174
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|19351456|gb|BM895988.1|BM895988
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|31998583|gb|CD662142.1|CD662142
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|149046499|gb|EE048023.2|EE048023
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|211115646|gb|FK987583.1|FK987583
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|29544497|gb|CB604877.1|CB604877
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|19272593|gb|BM888849.1|BM888849
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|60347459|gb|DN214432.1|DN214432
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|61117659|gb|DN558620.1|DN558620
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: GTGTCCGCCTCCACTTCGACCGTTTCATCAACCATCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|22491398|gb|BU051321.1|BU051321
genomic: GTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|148969192|gb|EE019938.2|EE019938
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|28931181|gb|CB334542.1|CB334542
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|31997862|gb|CD661811.1|CD661811
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|211115650|gb|FK987587.1|FK987587
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|211115644|gb|FK987581.1|FK987581
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTC-GCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGEST: gi|148964049|gb|EE015199.2|EE015199
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|31612233|gb|CD568855.1|CD568855
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|31406046|gb|CD484778.1|CD484778
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|78118785|gb|DV537169.1|DV537169
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|31406428|gb|CD485160.1|CD485160
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|87152426|gb|DY397215.1|DY397215
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|149009676|gb|EE041608.2|EE041608
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|31406129|gb|CD484861.1|CD484861
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGG-GTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|26557378|gb|CA829613.1|CA829613
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|211115642|gb|FK987579.1|FK987579
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGNGGCATAGCTACAGCAGGEST: gi|211115640|gb|FK987577.1|FK987577
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|67016760|gb|CO445509.1|CO445509
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|211115647|gb|FK987584.1|FK987584
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAA GATTCTGACTTGGAGAAGGCCCAGCEST: gi|29130492|gb|CB381196.1|CB381196
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGC
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|149094663|gb|EE180207.2|EE180207
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|211114861|gb|FK987574.1|FK987574
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|211114856|gb|FK987569.1|FK987569
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACCGCAGGEST: gi|148948613|gb|EC894142.2|EC894142
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|61117656|gb|DN558617.1|DN558617
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|22521190|gb|BU080001.1|BU080001
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGEST: gi|148932756|gb|EE285396.2|EE285396
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
EST: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG GATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtatcgcgtt ... gtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGG
gttgtgaagttggatgcttgatgtgcttaatttgtttttccgatggtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGGCCAAGGTGAAGTTCAATGTGAATCGTGTTGACAACATGGTGATCCAGG
gcttaat putative branch site (score: 90)
ttaatttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaaaattttggctgctgggcttatgcatagtgtatcaaattttgttgtgaagttggatgcttgatgtgcttaatttgtttttccgatggtgattgtagGATTCTGACTTGGAGAAGGCCCAGCTTGGCCTGGGGCATAGCTACAGCAGGGCCAAGGTGAAGTTCAATGTGAATCGTGTTGACAACATGGTGATCCAGG
- - - - - - gctgctg
- - - - - - - - - - - - atgcata
- - - - - - - - - - - - - - - -gtgtatc
- - - - - - - - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctt