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gtaaggaagccttgatttgctttctccgtgtagttctaataattagattccttccgtttctctccgtttgcggcatcatgagaaattattctttctcttcaacatgcccaatttgttgcgactcatgtctcatttgctgcatgtcatgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAG
species | Zea mays |
transcript | GRMZM2G144716_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTGATAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTG AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGACACGCTTEST: gi|12046177|gb|BF728316.1|BF728316
genomic: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
EST: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTG AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTEST: gi|93283064|gb|EB675328.1|EB675328
genomic: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
EST: TCTGAGAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTG AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTEST: gi|78179752|gb|DV550125.1|DV550125
genomic: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
EST: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTG AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTEST: gi|6636927|gb|AW261199.1|AW261199
genomic: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
EST: TGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTG AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTEST: gi|78081291|gb|DV509703.1|DV509703
genomic: TGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
EST: AAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTG AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTEST: gi|32798293|gb|CD950529.1|CD950529
genomic: AAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
EST: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTG AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTEST: gi|211197040|gb|FL177610.1|FL177610
genomic: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
EST: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGTTG AGTTGGACTACAEST: gi|6827615|gb|AW331258.1|AW331258
genomic: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACA
EST: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTG AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTEST: gi|211180004|gb|FL285245.1|FL285245
genomic: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
EST: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTG AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
genomic: TCTGAAAGTGGAGTTCCATCTGCGCGTCGGTTGATTTATTCTATTTGCTGgtaaggaagc ... atgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTT
aacatgcccaatttgttgcgactcatgtctcatttgctgcatgtcatgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAG
aatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaagccttgatttgctttctccgtgtagttctaataattagattccttccgtttctctccgtttgcggcatcatgagaaattattctttctcttcaacatgcccaatttgttgcgactcatgtctcatttgctgcatgtcatgtatacagAGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA